Difference between revisions of "Category:ObjSel Scripts"

Revision as of 17:17, 2 April 2010

Find connected clouds of objects in PyMOL

Colors all objects differently (Python script).

Find sequence or regular expression of amino acids in a protein.

Retrieves atom coordinates as Python objects.

Retrieves atom coordinates as Python array (list object).

Make named selections using regular expressions (protein sequence).

Prints a list of all residues in a selection (both Python and .pml).

Lists the color of all residues in a selection (both Python and .pml).

Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').

Python method that returns true if a selection of a given name exists.

Moves two parts of one object into different directions.

Splits an object into 2 pieces along a given axis.

Convert a multistate object into a group of single state objects.

Renumber residues such that the first residue is 0. Useful for alignments.

The following 37 pages are in this category, out of 37 total.