Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 Official Release PyMOL v2.2 has been released on July 24, 2018. New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... Inertia tensor Type Python Module Download inertia_tensor.py Author(s) Mateusz Maciejewski License MIT This code has been put under version control in the project Pymol-script-repo This script will draw the eigenvectors of the inertia tensor of the selected part of the molecule. Usage tensor selection, name, model Examples To draw the inertia tensor of the first model in PDB file 4B2R do: fetch 4b2r, async=0 hide lines show cartoon run inertia_tensor.py tensor 4b2r & n. n+ca+c & i. 569-623, tensor_dom11, 1 Reference A figure generated using this script can be seen in the following reference: Estimation of interdomain flexibility of N-terminus of factor H using residual dipolar couplings. Maciejewski M, Tjandra N, Barlow PN. Biochemistry. 50(38) 2011, p. 8138-49, fig. 1 doi:10.1021/bi200575b

A Random PyMOL-generated Cover. See Covers.