This is a read-only mirror of pymolwiki.org

Difference between revisions of "DSSP Stride"

From PyMOL Wiki
Jump to navigation Jump to search
(→‎Introduction: add news about the update of the plugin)
m
Line 10: Line 10:
  
 
= News =
 
= News =
2012_10_22: The most recent version of DSSP (v2.0.4) does not consider residues after the first [http://www.wwpdb.org/documentation/format33/sect9.html#TER <tt>TER</tt> record] from the same chain. The plugin has been updated to cope with this new feature.
+
2014_01_24_Update: The plugin is able to cope with empty chain name now.
 +
2012_10_22_Update: The most recent version of DSSP (v2.0.4) does not consider residues after the first [http://www.wwpdb.org/documentation/format33/sect9.html#TER <tt>TER</tt> record] from the same chain. The plugin has been updated to cope with this new feature.
  
 
= External links =
 
= External links =

Revision as of 08:33, 27 January 2014

Introduction

Type PyMOL Plugin
Download plugins/dssp_stride.py
Author(s) Hongbo Zhu
License -
This code has been put under version control in the project Pymol-script-repo

DSSP and Stride are popular tools for assigning secondary structures for proteins. DSSP & Stride Plugin for PyMOL provides a graphical user interface for coloring proteins according to their secondary structures assigned by DSSP or Stride. Most recent DSSP & Stride Plugin code can be obtained from this link.

News

2014_01_24_Update: The plugin is able to cope with empty chain name now. 2012_10_22_Update: The most recent version of DSSP (v2.0.4) does not consider residues after the first TER record from the same chain. The plugin has been updated to cope with this new feature.

External links

Demonstration of DSSP plugin (pdb:1pyg).