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Revision as of 03:24, 10 December 2018

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Welcome to the PyMOL Wiki!
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Quick Links
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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

TCONCOORD

== Description ==

tCONCOORD is a program that predicts conformational flexibility based on geometrical considerations. The focus is on proteins, however, most non-protein residues like ligands or other organic compounds are treated correctly. You can use it for:

1) Generating ensembles of protein structures

2) Generating alternate conformations of protein parts (e. g. loops)

3) Generating ensembles of organic compounds.

The PyMOL plugin helps to setup tCONCOORD runs and provides visual support for the structure analysis in tCONCOORD.

Installation

1) You need a working gromacs installation (ftp://ftp.gromacs.org/pub/gromacs/gromacs-3.3.3.tar.gz)

2) the tCONCOORD binaries (http://wwwuser.gwdg.de/~dseelig/tconcoord.html)

3) and the plugin itself (http://wwwuser.gwdg.de/~dseelig/cncplugin.html)

Author

Daniel Seeliger

A Random PyMOL-generated Cover. See Covers.