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Revision as of 10:57, 27 November 2018

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Centerofmass

The centerofmass command calculates the center of mass for an atom selection. It considers atom mass and occupancy.

New in PyMOL 1.7.2. See the center_of_mass script for older PyMOL versions.

Usage

centerofmass [ selection [, state ]]

Arguments

  • selection = str: atom selection {default: all}
  • state = int: object state, -1 for current state, 0 for all states {default: -1}

Example

PyMOL> fetch 1ubq, async=0
PyMOL> centerofmass
 Center of Mass: [  30.004,  28.522,  14.701]

Python API

cmd.centerofmass() returns a list of 3 floats.

See Also

A Random PyMOL-generated Cover. See Covers.