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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
 
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| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
 
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| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
 
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
 
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! 3D using Geforce
 
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| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 
 
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! Older News
 
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Revision as of 15:21, 14 November 2018

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
POSF PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

%PAGE%

Type Python Script
Download flatten_obj.py
Author(s) Spencer Bliven
License Public Domain
This code has been put under version control in the project Pymol-script-repo

Description

The flatten_obj python script combines multiple objects or states into a single object, renaming chains where required.

This is particularly useful for dealing with biological assemblies, which are loaded as multi-state objects when fetched using fetch PDBID, type=pdb1. It can also be used as a quick way to combine multiple objects without causing collisions between chain identifiers.

The command re-letters chains to avoid collisions. Older versions of PyMOL restrict the chain id to a single character, so the script will fail for assemblies with >62 chains. With more recent versions, this problem is solved with multi-character chain IDs. Several options are available for how re-lettering should occur.

Usage

   flatten_obj name, selection[, state[, rename[, quiet[, chain_map]]]]

Arguments

  • name = a unique name for the flattened ..→

[[%PAGE%|thumb|185px|A Random PyMOL-generated Cover. See Covers.]]


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