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Currently doing a PhD in structural bioinformatics at Glasgow University. I used to work on the [http://www.tops.leeds.ac.uk TOPS] project. | Currently doing a PhD in structural bioinformatics at Glasgow University. I used to work on the [http://www.tops.leeds.ac.uk TOPS] project. | ||
| + | |||
| + | Scripts by me: | ||
| + | |||
| + | * [[Translate_And_Measure]] : Move and report distances. | ||
| + | * [[Bounding_Box]] : CGO box around a selection. | ||
| + | * [[Ellipsoid]] : Callback ellipsoids. | ||
| + | * [[Plane_Wizard]] : Wizard of the planes. | ||
| + | * [[ss]] : List secondary structures as "start-end type". | ||
| + | * [[iterate_sses]] : Advanced version of [[ss]], allows user to pass a function to be applied to each sse. | ||
| + | * [[motif]] : Easy display of backbone motifs like nests and catgrips (or, of course, helices or strands). Also lists phi/psi. | ||
Latest revision as of 01:19, 28 March 2014
Been using PyMol on OSX for a while now, I do a lot of python programming now so it's great to write scripts for (dino is also nice, but has a more tcl-like syntax).
Currently doing a PhD in structural bioinformatics at Glasgow University. I used to work on the TOPS project.
Scripts by me:
- Translate_And_Measure : Move and report distances.
- Bounding_Box : CGO box around a selection.
- Ellipsoid : Callback ellipsoids.
- Plane_Wizard : Wizard of the planes.
- ss : List secondary structures as "start-end type".
- iterate_sses : Advanced version of ss, allows user to pass a function to be applied to each sse.
- motif : Easy display of backbone motifs like nests and catgrips (or, of course, helices or strands). Also lists phi/psi.