Difference between revisions of "Main Page"

Type	PyMOL Plugin
Download	http://emptyewer.github.io/Gyration_tensor
Author(s)	Venkatramanan Krishnamani
License	-

Latest revision as of 03:21, 22 June 2021

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Welcome to the PyMOL Wiki!
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Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellows announced for 2018-2019
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Gyration tensor

Introduction

This program calculates and visualizes the gration tensors of a protein (based on geometry) for each chain in the PDB file.

How to get it

git clone https://github.com/emptyewer/Gyration_tensor.git

Required Dependencies on Linux and Mac OS X

Tkinter and
Numpy

sudo apt-get install python-tk python-numpy

Installing on Linux

Navigate to plugins > install
Locate the downloaded gyration_tensor.py file in the dialogbox and select 'OK'
Quit and Restart 'pymol'

Usage

Launch PyMOL
Navigate to Plugins > Contact Map Visualizer in PyMOL
When the first dialog box pops up, select PDB file and select 'OK'.
The plugin calculates and outputs the Magnitude and Direction of the tensors in the debug window and draws the ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 30: / Line 30: @@
 |-
 ! Official Release
-| [https://pymol.org PyMOL v2.1 has been released] on March 13, 2018.
+| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
+|-
+! Python 3
+| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
+|-
+! POSF
+| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
+|-
+! Tutorial
+| [[Plugins Tutorial]] updated for PyQt5
+|-
+! New Plugin
+| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 |-
 ! Selection keywords
@@ Line 40: / Line 52: @@
 ! New Script
 | [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
-|-
-! New Plugin
-| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
-|-
-! New Plugin
-| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
-|-
-! New Plugin
-| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
-|-
-! New Plugin
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
-|-
-! 3D using Geforce
-| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 |-
 ! Older News

Difference between revisions of "Main Page"

Latest revision as of 03:21, 22 June 2021

Gyration tensor

Introduction

How to get it

Required Dependencies on Linux and Mac OS X

Installing on Linux

Usage

Navigation menu

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