This is a read-only mirror of pymolwiki.org

Difference between revisions of "Main Page"

From PyMOL Wiki
Jump to navigation Jump to search
m (1 revision)
m (2 revisions)
 
(19 intermediate revisions by 2 users not shown)
Line 28: Line 28:
 
{| class="jtable" style="float: left; width: 90%;"
 
{| class="jtable" style="float: left; width: 90%;"
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
−
|-
 
−
! Selection keywords
 
−
| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
 
|-
 
|-
 
! Official Release
 
! Official Release
−
| [https://pymol.org PyMOL v2.0 has been released] on September 20, 2017.
+
| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
 
|-
 
|-
−
! Plugin Update
+
! Python 3
−
| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
+
| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
|-
 
|-
−
! Official Release
+
! POSF
−
| [http://pymol.org PyMOL v1.8.6 has been released] on March 9, 2017.
+
| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
 
|-
 
|-
−
! Official Release
+
! Tutorial
−
| [http://pymol.org PyMOL v1.8.4 has been released] on October 4, 2016.
+
| [[Plugins Tutorial]] updated for PyQt5
−
|-
 
−
! New Script
 
−
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
 
|-
 
|-
 
! New Plugin
 
! New Plugin
−
| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
+
| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
|-
 
|-
−
! Official Release
+
! Selection keywords
−
| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
+
| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
|-
 
|-
−
! PyMOL Open-Source Fellowship
+
! Plugin Update
−
| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
+
| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 
|-
 
|-
−
! Official Release
+
! New Script
−
| [http://pymol.org PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released] on May 4, 2015.
+
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
−
|-
 
−
! New Plugin
 
−
| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
 
−
|-
 
−
! New Plugin
 
−
| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
 
−
|-
 
−
! New Plugin
 
−
| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
 
−
|-
 
−
! 3D using Geforce
 
−
| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 
 
|-
 
|-
 
! Older News
 
! Older News

Latest revision as of 03:21, 22 June 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

PDB plugin

== PDB PyMOL plugin ==

PDBe’s PyMOL plugin provides an easy way to visualise PDB data and annotations in PyMOL. This includes displaying individual molecules, Pfam, SCOP and CATH domains and viewing geometric validation for PDB entries based on PDBe's API.

Installation

The PDB PyMOL plugin works on PyMOL 1.6 or later

PyMOL 1.6

Download the plugin from the following URL:

http://www.ebi.ac.uk/pdbe/pdb-component-library/pymol_plugin/PDB_plugin.py

PyMOL 1.7 or later

Open the “plugin manager” Enter the following url in the “Install from PyMOL Wiki or URL

http://www.ebi.ac.uk/pdbe/pdb-component-library/pymol_plugin/PDB_plugin.py

This will add the following items to the Plugins menu:

PDB Analysis - All

PDB Analysis - Molecules

PDB Analysis - Domains

PDB Analysis - Validation

PDB Analysis - Assemblies


Screenshot of the menu


Screenshot of the PyMOL plugin menu with the PDB plugin installed


To use each component click the menu item in the Plugins menu ..→

A Random PyMOL-generated Cover. See Covers.


Retrieved from "http://wiki.pymol.org/index.php?title=Main_Page&oldid=14896"