Difference between revisions of "Main Page"

Type	Python Module
Download	cgo_grid.py
Author(s)	Andreas Warnecke
License	BSD-2-Clause
	This code has been put under version control in the project Pymol-script-repo

Latest revision as of 03:21, 22 June 2021

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellows announced for 2018-2019
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Cgo grid

About cgo_grid

cgo_grid will generate a flowing mesh object using the points provided or the current view. By default is will generate a flowing membrane. The shape is affected substantially by the arguments!

For instruction on setting up plugin import see Git intro or Plugin Manager

Usage

cgo_grid has many arguments, but not all need to be set necessarily (see arguments or examples).

cgo_grid [ pos1 [, pos2 [, pos3 [, length_x [, length_z [, npoints_x [, npoints_z
[, nwaves_x [, nwaves_z [, offset_x [, offset_z [, gain_x [, gain_z
[, thickness [, color [, nstates [, startframe [, endframe
[, mode [, view [, name [, quiet ]]]]]]]]]]]]]]]]]]]]]]

Arguments

..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 28: / Line 28: @@
 {| class="jtable" style="float: left; width: 90%;"
 |+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
-|-
-! Plugin Update
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 |-
 ! Official Release
-| [http://pymol.org PyMOL v1.8.6 has been released] on March 9, 2017.
+| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
-|-
-! Official Release
-| [http://pymol.org PyMOL v1.8.4 has been released] on October 4, 2016.
-|-
-! New Script
-| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
-|-
-! New Plugin
-| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
 |-
-! Official Release
+! Python 3
-| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
+| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 |-
-! PyMOL Open-Source Fellowship
+! POSF
-| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
+| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
 |-
-! Official Release
+! Tutorial
-| [http://pymol.org PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released] on May 4, 2015.
+| [[Plugins Tutorial]] updated for PyQt5
 |-
 ! New Plugin
-| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
+| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 |-
-! New Plugin
+! Selection keywords
-| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
+| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 |-
-! New Plugin
+! Plugin Update
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
+| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 |-
-! 3D using Geforce
+! New Script
-| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
+| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 |-
 ! Older News