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Difference between revisions of "Stick radius"
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==Overview== | ==Overview== | ||
| + | This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25. | ||
| − | + | In newer versions of PyMOL, one may set the [[Stick_radius]] on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the [[Set_bond]] command. | |
| + | |||
| + | <gallery> | ||
| + | Image:Stick_rad_0.05.png|stick_radius set to 0.05 | ||
| + | Image:Stick_radius_default.png|stick_radius set to the default 0.25 | ||
| + | Image:Stick_rad_0.85.png|stick_radius set to 0.85 | ||
| + | </gallery> | ||
==Syntax== | ==Syntax== | ||
| + | <source lang="python"> | ||
| + | set_bond stick_radius, ''size'', selection | ||
| + | </source> | ||
| + | where, | ||
| + | *''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers. | ||
| + | |||
| + | ''Note:'' <source lang="python">set_bond stick_radius</source> by itself will revert to 1.00. | ||
| + | ==If the above commands do not work== | ||
| + | You can do something like below | ||
| + | <source lang="python"> | ||
| − | + | To set on the entire object | |
| − | + | set stick_radius=0.12 | |
| − | + | OR | |
| + | |||
| + | create myObj, <selection> | ||
| + | |||
| + | Ex : create myObj, hetatm | ||
| + | |||
| + | set stick_radius,0.2,myObj | ||
| + | |||
| + | |||
| + | </source> | ||
==Related settings== | ==Related settings== | ||
| − | + | *[[Set_bond]] | |
*[[sphere_scale]] | *[[sphere_scale]] | ||
*[[stick_ball_ratio]] | *[[stick_ball_ratio]] | ||
| + | |||
| + | [[Category:Sticks]] | ||
| + | [[Category:Settings]] | ||
Latest revision as of 03:36, 28 March 2014
Overview
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.
In newer versions of PyMOL, one may set the Stick_radius on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the Set_bond command.
stick_radius set to 0.05
stick_radius set to the default 0.25
stick_radius set to 0.85
Syntax
set_bond stick_radius, ''size'', selection
where,
- size can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.
Note:
set_bond stick_radius
by itself will revert to 1.00.
If the above commands do not work
You can do something like below
To set on the entire object
set stick_radius=0.12
OR
create myObj, <selection>
Ex : create myObj, hetatm
set stick_radius,0.2,myObj