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| − | = Manual download of scripts = | + | == Manual download of scripts == |
If you don't have the option or want't to install git on your system, then go to | If you don't have the option or want't to install git on your system, then go to | ||
https://github.com/Pymol-Scripts/Pymol-script-repo | https://github.com/Pymol-Scripts/Pymol-script-repo | ||
| Line 9: | Line 9: | ||
Now go to: '''Adding Pymol-script-repo to PyMOL search path''' | Now go to: '''Adding Pymol-script-repo to PyMOL search path''' | ||
| − | = Git install instructions = | + | == Git install instructions == |
| − | == For windows users == | + | === For windows users === |
# Install [http://code.google.com/p/msysgit/downloads/list?can=3&q=official+Git Git for Windows]. | # Install [http://code.google.com/p/msysgit/downloads/list?can=3&q=official+Git Git for Windows]. | ||
Use following settings in options, [http://www.geekgumbo.com/2010/04/09/installing-git-on-windows/ (You can read more here)]. | Use following settings in options, [http://www.geekgumbo.com/2010/04/09/installing-git-on-windows/ (You can read more here)]. | ||
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You now have all the scripts available in your directory. | You now have all the scripts available in your directory. | ||
| − | == For Ubuntu/Mint users == | + | === For Ubuntu/Mint users === |
# Install git | # Install git | ||
sudo apt-get install git | sudo apt-get install git | ||
| Line 31: | Line 31: | ||
You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo | You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo | ||
| − | = Adding Pymol-script-repo to PyMOL search path = | + | == Adding Pymol-script-repo to PyMOL search path == |
You now have to add the "Pymol-script-repo" directory to the PyMOL search path. | You now have to add the "Pymol-script-repo" directory to the PyMOL search path. | ||
| − | == For windows users == | + | === For windows users === |
# Open notepad | # Open notepad | ||
# Write (Remember forward slashes) | # Write (Remember forward slashes) | ||
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sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo') | sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo') | ||
Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files") | Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files") | ||
| − | == For Ubuntu/Mint users == | + | === For Ubuntu/Mint users === |
gedit ~/.pymolrc | gedit ~/.pymolrc | ||
Write | Write | ||
| Line 46: | Line 46: | ||
Save and exit | Save and exit | ||
| − | = Test the Scripts = | + | == Test the Scripts == |
Now start PyMOL, and test in PyMOL. | Now start PyMOL, and test in PyMOL. | ||
print sys.path | print sys.path | ||
| Line 52: | Line 52: | ||
help(colorbydisplacement) | help(colorbydisplacement) | ||
| − | = Get latest changes to scripts = | + | == Get latest changes to scripts == |
If new scripts are available or changes have been made, then: | If new scripts are available or changes have been made, then: | ||
| − | == For windows users == | + | === For windows users === |
# Navigate to '''C:/Users/YOURNAME/Documents/Pymol-script-repo''' | # Navigate to '''C:/Users/YOURNAME/Documents/Pymol-script-repo''' | ||
# Right click in folder -> Select: Git Bash | # Right click in folder -> Select: Git Bash | ||
# Write in terminal | # Write in terminal | ||
git pull origin master | git pull origin master | ||
| − | == For Ubuntu/Mint users == | + | === For Ubuntu/Mint users === |
# Navigate to '''/home/YOURNAME/Software/pymol/Pymol-script-repo''' | # Navigate to '''/home/YOURNAME/Software/pymol/Pymol-script-repo''' | ||
# Write in terminal. | # Write in terminal. | ||
Revision as of 12:34, 1 December 2011
Manual download of scripts
If you don't have the option or want't to install git on your system, then go to
https://github.com/Pymol-Scripts/Pymol-script-repo
Click the "ZIP" button, near the top left corner. Now unpack the files to a directory. For example:
C:/Users/YOURNAME/Documents/Pymol-script-repo /home/YOURNAME/Software/pymol
Now go to: Adding Pymol-script-repo to PyMOL search path
Git install instructions
For windows users
- Install Git for Windows.
Use following settings in options, (You can read more here).
- Windows Explorer Integration -> Context Menu Entries -> Git Bash Here + Git GUI here
- Run Git and included Unix tools from Windows Command prompts
- Checkout Windows style, commit Unix-style endings
- Navigate to: C:/Users/YOURNAME/Documents (Note, always use forward slashes "/" for compatibility)
- Right click in folder -> Select: Git Gui -> Clone Existing Repository
- Source Location: git://github.com/Pymol-Scripts/Pymol-script-repo.git
- Target Directory: C:/Users/YOURNAME/Documents/Pymol-script-repo
You now have all the scripts available in your directory.
For Ubuntu/Mint users
- Install git
sudo apt-get install git
- Navigate to desired folder:
cd /home/YOURNAME/Software/pymol git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git
You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo
Adding Pymol-script-repo to PyMOL search path
You now have to add the "Pymol-script-repo" directory to the PyMOL search path.
For windows users
- Open notepad
- Write (Remember forward slashes)
import sys
sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')
Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")
For Ubuntu/Mint users
gedit ~/.pymolrc
Write
import sys
sys.path.append('/home/YOURNAME/Software/pymol/Pymol-script-repo')
Save and exit
Test the Scripts
Now start PyMOL, and test in PyMOL.
print sys.path import colorbydisplacement help(colorbydisplacement)
Get latest changes to scripts
If new scripts are available or changes have been made, then:
For windows users
- Navigate to C:/Users/YOURNAME/Documents/Pymol-script-repo
- Right click in folder -> Select: Git Bash
- Write in terminal
git pull origin master
For Ubuntu/Mint users
- Navigate to /home/YOURNAME/Software/pymol/Pymol-script-repo
- Write in terminal.
git pull origin master
Do you want to contribute with a script?
Information how to contribute scripts to the repository. It's easy!
http://www.pymolwiki.org/index.php/git_authors