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Marcocamma (talk | contribs) m (Correct typo "deday"->"decay") |
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| (2 intermediate revisions by the same user not shown) | |||
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{| align="center" | {| align="center" | ||
| − | |+ style=" | + | |+ style="font-size:190%; font-weight: bold; color:#038; padding-bottom: 15px;" |PyMOLWiki Gallery |
|- style="text-align:center; font-weight: bold; font-size:120%; color:#333;" | |- style="text-align:center; font-weight: bold; font-size:120%; color:#333;" | ||
| Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]'' | | Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]'' | ||
| + | |- | ||
|} | |} | ||
| Line 66: | Line 67: | ||
*[[surface_color]] | *[[surface_color]] | ||
*[[surface_type]] | *[[surface_type]] | ||
| + | }} | ||
| + | |||
| + | {{GalleryImage | ||
| + | |image=QuteMolLike.png|size=400px|title=QuteMol Like|description=QuteMol like image--modern ''feel'' to it. | ||
| + | |cmdString=<source lang="python"> | ||
| + | load $TUT/1hpv.pdb | ||
| + | set_color oxygen, [1.0,0.4,0.4] | ||
| + | set_color nitrogen, [0.5,0.5,1.0] | ||
| + | remove solvent | ||
| + | as spheres | ||
| + | util.cbaw | ||
| + | bg white | ||
| + | set light_count,10 | ||
| + | set spec_count,1 | ||
| + | set shininess, 10 | ||
| + | set specular, 0.25 | ||
| + | set ambient,0 | ||
| + | set direct,0 | ||
| + | set reflect,1.5 | ||
| + | set ray_shadow_decay_factor, 0.1 | ||
| + | set ray_shadow_decay_range, 2 | ||
| + | unset depth_cue | ||
| + | # for added coolness | ||
| + | # set field_of_view, 60 | ||
| + | ray | ||
| + | </source> | ||
| + | |seeAlso= | ||
| + | *[[Load]] | ||
| + | *[[Set_color]] | ||
| + | *[[Remove]] | ||
| + | *[[Solvent]] | ||
| + | *[[As]] | ||
| + | *[[Util]] | ||
| + | *[[Util.cbaw]] | ||
| + | *[[Bg]] | ||
| + | *[[Light_Count]] | ||
| + | *[[Spec_Count]] | ||
| + | *[[Shininess]] | ||
| + | *[[Specular]] | ||
| + | *[[Ambient]] | ||
| + | *[[Direct]] | ||
| + | *[[Reflect]] | ||
| + | *[[Ray_shadow_decay_factor]] | ||
| + | *[[Ray_shadow_decay_range]] | ||
| + | *[[Unset]] | ||
| + | *[[depth_cue]] | ||
| + | *[[Ray]] | ||
| + | *[[Set]] | ||
| + | *[[Property_Selectors |Short form Selectors]] | ||
}} | }} | ||
Revision as of 12:36, 23 July 2008
| Cool PyMOL-generated Images and their Scripts. Add Your Own |
| Grid Mode | What To Type | |||||
|
fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode
|
| Cool Perspective | What To Type | |||||
|
load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray
|
| Representing a binding pocket | What To Type | |||||
|
load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp
set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1
show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig
set surface_color, white
set surface_type, 2 # mesh
unset ray_shadows
|
| QuteMol Like | What To Type | |||||
|
load $TUT/1hpv.pdb
set_color oxygen, [1.0,0.4,0.4]
set_color nitrogen, [0.5,0.5,1.0]
remove solvent
as spheres
util.cbaw
bg white
set light_count,10
set spec_count,1
set shininess, 10
set specular, 0.25
set ambient,0
set direct,0
set reflect,1.5
set ray_shadow_decay_factor, 0.1
set ray_shadow_decay_range, 2
unset depth_cue
# for added coolness
# set field_of_view, 60
ray
|
