This is a read-only mirror of pymolwiki.org
Difference between revisions of "Main Page"
James.watney (talk | contribs) m (Changed link to PyMOL sale announcement on Schrodinger website) |
|||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
− | |||
{| align="center" style="padding-bottom: 4em;" | {| align="center" style="padding-bottom: 4em;" | ||
− | |+ style="font-size:210%; font-weight: bold; color:#032d45; text-align:center; padding: 5px; margin-bottom: | + | |+ style="font-size:210%; font-weight: bold; color:#032d45; text-align:center; padding: 5px; margin-bottom: 4px;" | Welcome to the PyMOL Wiki! |
|- style="text-align:center; font-weight:bold; color: #6d6003; font-size: 140%; font-style: italic; font-family: serif;" | |- style="text-align:center; font-weight:bold; color: #6d6003; font-size: 140%; font-style: italic; font-family: serif;" | ||
| The community-run support site for the [http://pymol.org PyMOL] molecular viewer. | | The community-run support site for the [http://pymol.org PyMOL] molecular viewer. | ||
|} | |} | ||
− | |||
{| align="center" width="45%" style="background: #EDEBD5; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;" | {| align="center" width="45%" style="background: #EDEBD5; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;" | ||
|+ style="font-size: 1.4em; font-weight: bold; color: #032d45; text-align:center; background: #5F7F96; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #AFB29E; border-bottom: 1px solid #fff;" |Quick Links | |+ style="font-size: 1.4em; font-weight: bold; color: #032d45; text-align:center; background: #5F7F96; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #AFB29E; border-bottom: 1px solid #fff;" |Quick Links | ||
Line 18: | Line 16: | ||
||'''[[GoogleSearch]]''' | ||'''[[GoogleSearch]]''' | ||
|} | |} | ||
− | |||
{| width="100%" | {| width="100%" | ||
Line 24: | Line 21: | ||
{| class="jtable" style="float: left; width: 90%;" | {| class="jtable" style="float: left; width: 90%;" | ||
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates | |+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates | ||
+ | |- | ||
+ | ! Schrodinger Buys PyMOL | ||
+ | | Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the [http://www.schrodinger.com/news/47/ sale]. | ||
+ | |- | ||
+ | ! User Movie | ||
+ | | One of our users has posted another [http://www.youtube.com/watch?v=eQWw6x3fLF0 interesting movie], images from which were created with PyMOL. | ||
+ | |- | ||
+ | ! New setting | ||
+ | | [[surface_cavity_mode]] to change how PyMOL displays cavities. | ||
+ | |- | ||
+ | ! Search fixed. | ||
+ | | Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems. | ||
+ | |- | ||
+ | ! New Command | ||
+ | | [[Cache]]—stores information on structures, so we don't have to recompute them. | ||
|- | |- | ||
! Warren | ! Warren | ||
| News about Warren DeLano's passing may be read on [[Warren|Warren's memorial page]]. | | News about Warren DeLano's passing may be read on [[Warren|Warren's memorial page]]. | ||
+ | |- | ||
+ | ! Setting | ||
+ | | [[Fetch_Path]]—Sets the default path for the [[fetch]] command. | ||
+ | |- | ||
+ | ! New Script | ||
+ | | [[SelInside]]—Creates a custom selection of all atoms spatially inside some user-defined box. | ||
+ | |- | ||
+ | ! New Script | ||
+ | | [[ContactsNCONT]]—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite | ||
+ | |- | ||
+ | ! Fun | ||
+ | | [http://www.youtube.com/watch?v=oCRJ4r0RDC4 PCR Rap] video made with PyMOL (YouTube). | ||
|- | |- | ||
! PyMOLWiki | ! PyMOLWiki | ||
Line 39: | Line 63: | ||
! PyMOL | ! PyMOL | ||
| PyMOL now has a [[Set]] command for basic settings, and a [[Set_bond]] command for bond-only settings. | | PyMOL now has a [[Set]] command for basic settings, and a [[Set_bond]] command for bond-only settings. | ||
− | |||
− | |||
− | |||
|} | |} | ||
|style="vertical-align: top; width: 40%"| | |style="vertical-align: top; width: 40%"| | ||
Line 52: | Line 73: | ||
category=Commands|Plugins|Script_Library|Settings | category=Commands|Plugins|Script_Library|Settings | ||
includepage=* | includepage=* | ||
− | includemaxlength= | + | includemaxlength=450 |
escapelinks=false | escapelinks=false | ||
resultsheader=__NOTOC__ __NOEDITSECTION__ | resultsheader=__NOTOC__ __NOEDITSECTION__ | ||
Line 70: | Line 91: | ||
escapelinks=false | escapelinks=false | ||
openreferences=true | openreferences=true | ||
− | listseparators=[[,%PAGE%,|thumb|185px|A Random PyMOL-generated Cover. See [[Covers]].]], | + | listseparators=[[,%PAGE%,|thumb|185px|A Random PyMOL-generated Cover. See [[Covers]].]],\n |
</dpl> | </dpl> | ||
|} | |} |
Revision as of 17:56, 18 January 2010
The community-run support site for the PyMOL molecular viewer. |
Tutorials | Table of Contents | Commands |
Script Library | Plugins | FAQ |
Gallery | Covers | PyMOL Cheat Sheet (PDF) | GoogleSearch |
|
|
The DPL extension (version 2.3.0) produced a SQL statement which lead to a Database error. Error message is:
|