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Difference between revisions of "PyMOLWiki:Community Portal"
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= How to Get Involved = | = How to Get Involved = | ||
| − | * First, go | + | * First, go sign up, if you don't already have an account. New accounts can be created from any page; see the upper right hand side of any given page. |
== What to Do == | == What to Do == | ||
| − | + | * If you have a powerful little script you wrote and enjoy using, upload it and let the world know about it. | |
| − | * If you have a | + | * Each of the commands, needs many many nice examples of usage. Feel free to expound (and comment on) the commands. |
| − | * We need | + | * More internal linking (from page to page) is needed. |
| + | * We also need a way to make things easier to find on the wiki. | ||
== Features == | == Features == | ||
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See [http://qbnz.com/highlighter/index.php The Geshi Home Page] | See [http://qbnz.com/highlighter/index.php The Geshi Home Page] | ||
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| + | ==Paid documentation?== | ||
| + | I might be interested in using PyMOL, but I don't like the fact that I have to pay for documentation. I don't even know what I'm missing out on, and I don't know if it's worth trying out PyMOL, or becoming actively involved in its development (or simply the creation of content on this wiki). [[User:Guaka|Guaka]] 07:28, 5 September 2007 (CDT) | ||
Revision as of 12:28, 5 September 2007
How to Get Involved
- First, go sign up, if you don't already have an account. New accounts can be created from any page; see the upper right hand side of any given page.
What to Do
- If you have a powerful little script you wrote and enjoy using, upload it and let the world know about it.
- Each of the commands, needs many many nice examples of usage. Feel free to expound (and comment on) the commands.
- More internal linking (from page to page) is needed.
- We also need a way to make things easier to find on the wiki.
Features
New! GeShi: Syntax Highlighting for Python & More
Use Geshi for syntax highlighting your Python code! Update: I have added the option for numbered syntax highlighting and non-numbered.
<source lang="python">Non line-numbered code here</source>
<npython>line-numbered code here</npython>
Now with line numbers (or not)!
<npython>
- axes.py
from pymol.cgo import * from pymol import cmd from pymol.vfont import plain
- create the axes object, draw axes with cylinders coloured red, green,
- blue for X, Y and Z
obj = [
CYLINDER, 0., 0., 0., 50., 0., 0., 0.2, 1.0, 1.0, 1.0, 1.0, 0.0, 0., CYLINDER, 0., 0., 0., 0., 50., 0., 0.2, 1.0, 1.0, 1.0, 0., 1.0, 0., CYLINDER, 0., 0., 0., 0., 0., 50., 0.2, 1.0, 1.0, 1.0, 0., 0.0, 1.0, ]
- add labels to axes object (requires pymol version 0.8 or greater, I
- believe
cyl_text(obj,plain,[-5.,-5.,-1],'Origin',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]]) cyl_text(obj,plain,[50.,0.,0.],'X',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]]) cyl_text(obj,plain,[0.,50.,0.],'Y',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]]) cyl_text(obj,plain,[0.,0.,50.],'Z',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]])
- then we load it into PyMOL
cmd.load_cgo(obj,'axes') </npython>
Paid documentation?
I might be interested in using PyMOL, but I don't like the fact that I have to pay for documentation. I don't even know what I'm missing out on, and I don't know if it's worth trying out PyMOL, or becoming actively involved in its development (or simply the creation of content on this wiki). Guaka 07:28, 5 September 2007 (CDT)