Difference between revisions of "Main Page"

Type	Python Module
Download	movie_fade.py
Author(s)	Jason Vertrees and Thomas Holder
License	BSD-2-Clause
	This code has been put under version control in the project Pymol-script-repo

Latest revision as of 03:21, 22 June 2021

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellows announced for 2018-2019
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Movie fade

This script will help fade in and out settings in a movie. Just specify the setting, it's initial value at an initial frame and it's ending value and frame.

Usage

movie_fade setting, startFrame, startVal, endFrame, endVal [, selection ]

Examples

To fade in sticks from fully transparent to fully opaque across 60 frames do:

mset 1x60
movie_fade stick_transparency, 1, 1., 60, 0.

More complex example which involves camera motion:

fetch 1rx1, async=0
as cartoon
show surface
mset 1x80
movie.roll
movie_fade transparency,  1, 0., 40, 1.
movie_fade transparency, 41, 1., 80, 0.

Example file:

Result

<source lang="python"> import movie_fade

fetch 1hpv, async=0 orient

format

bg black show_as cartoon color marine, ss s color ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 30: / Line 30: @@
 |-
 ! Official Release
-| [https://pymol.org PyMOL v2.2 has been released] on July 24, 2018.
+| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
+|-
+! Python 3
+| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 |-
 ! POSF
-| [https://pymol.org/fellowship PyMOL Open-Source Fellowship program] accepting applications for 2018-2019
+| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
+|-
+! Tutorial
+| [[Plugins Tutorial]] updated for PyQt5
 |-
 ! New Plugin
-| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
+| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 |-
 ! Selection keywords
@@ Line 46: / Line 52: @@
 ! New Script
 | [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
-|-
-! New Plugin
-| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
-|-
-! New Plugin
-| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
-|-
-! New Plugin
-| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
-|-
-! New Plugin
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
-|-
-! 3D using Geforce
-| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 |-
 ! Older News

Difference between revisions of "Main Page"

Latest revision as of 03:21, 22 June 2021

Movie fade

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