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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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! Plugin Update
 
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 
 
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! Official Release
 
! Official Release
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| [http://pymol.org PyMOL v1.8.6 has been released] on March 9, 2017.
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
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! Official Release
 
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| [http://pymol.org PyMOL v1.8.4 has been released] on October 4, 2016.
 
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! New Script
 
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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
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! New Plugin
 
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| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
 
 
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! Official Release
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! Python 3
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| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
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! PyMOL Open-Source Fellowship
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! POSF
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| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
 
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! Official Release
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! Tutorial
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| [http://pymol.org PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released] on May 4, 2015.
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| [[Plugins Tutorial]] updated for PyQt5
 
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! New Plugin
 
! New Plugin
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| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! New Plugin
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! Selection keywords
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| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
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| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
|-
 
|-
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! New Plugin
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! Plugin Update
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 
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! 3D using Geforce
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! New Script
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| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
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! Older News
 
! Older News

Latest revision as of 03:21, 22 June 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Sst

Included in psico
This command or function is available from psico, which is a PyMOL extension.

Module psico.editing

sst is a wrapper for the SST secondary structural assignment web service. The command updates PyMOL's ss atom property.

SST does minimum message length inference of secondary structure based on C-alpha atom positions.

Usage

sst [ selection [, raw [, state ]]]

Arguments

  • selection = str: atom selection {default: all}
  • raw = str: atom property to assign the sst secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the ss property {default: }
  • state = int: object state {default: -1 (current state)}

Example

import psico.editing
fetch 1ubq, async=0

sst all, raw=custom
as cartoon

color gray
spectrum custom, selection=guide
set cartoon_discrete_colors, 1
label guide, custom

See Also
A Random PyMOL-generated Cover. See Covers.


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