Difference between revisions of "Main Page"

Revision as of 15:21, 14 November 2018

hosted by

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

News & Updates
Tutorial	Plugins Tutorial updated for PyQt5
Official Release	PyMOL v2.2 has been released on July 24, 2018.
POSF	PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin	ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...
Multisave The multisave command can save a multi-entry PDB file. Every object in the given selection will have a HEADER record, and is terminated with END. Loading such a multi-entry PDB file into PyMOL will load each entry as a separate object. This behavior is different to the save command, where a multi-object selection is written "flat" to a PDB file, without HEADER records. Older versions could also export a proprietary binary "pmo" file format with this command. However, "pmo" format never supported multiple entries, support was partially broken in in the 1.7 and 1.8 versions, and was finally removed in 1.8.4. Changes in PyMOL 1.8.4 CRYST1 records are written if symmetry is defined Interpret "pattern" argument as an atom selection. Previous versions expected an object name pattern or a list of objects. dropped "pmo" format support Usage multisave filename [, pattern [, state [, append ]]] Arguments filename = str: file path to be written pattern = str: atom selection (before ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 28: / Line 28: @@
 {| class="jtable" style="float: left; width: 90%;"
 |+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
+|-
+! Tutorial
+| [[Plugins Tutorial]] updated for PyQt5
 |-
 ! Official Release
@@ Line 46: / Line 49: @@
 ! New Script
 | [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
-|-
-! New Plugin
-| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
-|-
-! New Plugin
-| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
-|-
-! New Plugin
-| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
-|-
-! New Plugin
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
-|-
-! 3D using Geforce
-| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 |-
 ! Older News