Difference between revisions of "Main Page"

	Included in psico; This command or function is available from psico, which is a PyMOL extension.
Module	psico.helping

Type	Python Script
Download	grepset.py
Author(s)	Ezequiel Panepucci
License	BSD
	This code has been put under version control in the project Pymol-script-repo

Revision as of 15:21, 14 November 2018

hosted by

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
Tutorial	Plugins Tutorial updated for PyQt5
Official Release	PyMOL v2.2 has been released on July 24, 2018.
POSF	PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin	ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Grepset

Use this little script to explore PyMOL's myriad settings.

Usefull for newbies and those with not so good memory skills...

To use:

put the script in a file called grepset.py
from within PyMOL execute run grepset.py. If you have the Pymol-script library configured, then import grepset
try it out, see examples below.

Example 1: grepset light

cartoon_highlight_color        default
dot_lighting                   on
light                          [ -0.40000, -0.40000, -1.00000 ]
mesh_lighting                  off
two_sided_lighting             off
5 settings matched

Example 2: grepset trans

cartoon_transparency           0.00000
ray_transparency_contrast      1.00000
ray_transparency_shadows       1
ray_transparency_spec_cut      0.90000
ray_transparency_specular      0.40000
sphere_transparency

..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 28: / Line 28: @@
 {| class="jtable" style="float: left; width: 90%;"
 |+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
+|-
+! Tutorial
+| [[Plugins Tutorial]] updated for PyQt5
 |-
 ! Official Release
@@ Line 46: / Line 49: @@
 ! New Script
 | [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
-|-
-! New Plugin
-| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
-|-
-! New Plugin
-| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
-|-
-! New Plugin
-| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
-|-
-! New Plugin
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
-|-
-! 3D using Geforce
-| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 |-
 ! Older News

Difference between revisions of "Main Page"

Revision as of 15:21, 14 November 2018

Grepset

Navigation menu

Search