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Difference between revisions of "ColorByGroup"
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(Created page with "{{Infobox script-repo |type = script |author = Zhenting Gao }} == Introduction == Color the objects by their groups. == Usage == *Open PyMOL *Load PD...") |
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Revision as of 06:42, 12 November 2018
| Type | Python Script |
|---|---|
| Download | |
| Author(s) | Zhenting Gao |
| License | |
Introduction
Color the objects by their groups.
Usage
- Open PyMOL
- Load PDB files, create groups
- run this Python script inside PyMOL
- call the function
- colorByGroup
Required Arguments
Text
Optional Arguments
Text
Examples
Text
The Code
def colorByGroup():
#Based on: https://pymolwiki.org/index.php/Get_Names#ARGUMENTS
#Author: Zhenting Gao (zhentgpicasa@gmail.com)
#Update: 11/12/2018
#Aim: Color atoms of a binding site based on their distance from a point
# returns the length of the distance between atom A and atom B
groups=cmd.get_names("group_objects")
numClusters=len(groups)
import math
for x in range(numClusters):
colorCode=x*int(math.floor(255/numClusters))
util.cba(colorCode,groups[x])
print(colorCode,groups[x])
cmd.extend('colorByGroup', colorByGroup)