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Difference between revisions of "Connect mode"
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Values: | Values: | ||
| − | * 0 = distance-based and CONECT records | + | * 0 = distance-based (excluding HETATM to HETATM) and CONECT records |
* 1 = CONECT records | * 1 = CONECT records | ||
* 2 = distance-based, ignores CONECT records | * 2 = distance-based, ignores CONECT records | ||
| − | * 3 = CONECT records and | + | * 3 = distance-based (including HETATM to HETATM) and CONECT records |
| + | * 4 = for loading mmCIF: use the [http://www.wwpdb.org/data/ccd chemical components dictionary] to look up bonds (''in PyMOL 1.7.4, '''components.cif''' needs to be present in the current directory, later versions have a subset of the dictionary bundled with PyMOL, and look up unknown residues from a web service'') | ||
= Syntax = | = Syntax = | ||
| Line 17: | Line 18: | ||
= See Also = | = See Also = | ||
[[Load]], [[Connect_cutoff]], [[Connect_bonded]] | [[Load]], [[Connect_cutoff]], [[Connect_bonded]] | ||
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| − | |||
[[Category:Settings]] | [[Category:Settings]] | ||
Latest revision as of 02:46, 3 April 2017
Overview
Sets how bonds are made when loading a file.
Values:
- 0 = distance-based (excluding HETATM to HETATM) and CONECT records
- 1 = CONECT records
- 2 = distance-based, ignores CONECT records
- 3 = distance-based (including HETATM to HETATM) and CONECT records
- 4 = for loading mmCIF: use the chemical components dictionary to look up bonds (in PyMOL 1.7.4, components.cif needs to be present in the current directory, later versions have a subset of the dictionary bundled with PyMOL, and look up unknown residues from a web service)
Syntax
# ignore CONECT records
set connect_mode, 2