This is a read-only mirror of pymolwiki.org
Difference between revisions of "Read Pdbstr"
Jump to navigation
Jump to search
m (6 revisions) |
|||
| (5 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
| − | + | ||
| − | + | '''read_pdbstr''' in an API-only function which reads a pdb file from a Python string. This feature can be used to load or update structures into PyMOL without involving any temporary files. | |
| − | + | ||
| − | |||
| − | |||
| − | |||
===PYMOL API ONLY=== | ===PYMOL API ONLY=== | ||
| − | + | <source lang="python"> | |
| − | + | cmd.read_pdbstr( string pdb-content, string object name | |
| − | + | [ ,int state [ ,int finish [ ,int discrete ] ] ] ) | |
| − | + | </source> | |
===NOTES=== | ===NOTES=== | ||
| + | '''state''' is a 1-based state index for the object. | ||
| − | + | '''finish''' is a flag (0 or 1) which can be set to zero to improve [[:Category:Performance|performance]] when loading large numbers of objects, but you must call "finish_object" when you are done. | |
| − | + | '''discrete''' is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the PDB files being loaded. '''discrete''' objects save memory but can not be edited. | |
| − | + | ||
| − | + | ||
| − | + | [[Category:Commands|Read Pdbstr]] | |
| − | + | [[Category:Performance|Read Pdbstr]] | |
| − | + | [[Category:States|Read Pdbstr]] | |
| − | |||
| − | |||
| − | [[Category:Commands| | ||
Latest revision as of 03:53, 28 March 2014
read_pdbstr in an API-only function which reads a pdb file from a Python string. This feature can be used to load or update structures into PyMOL without involving any temporary files.
PYMOL API ONLY
cmd.read_pdbstr( string pdb-content, string object name
[ ,int state [ ,int finish [ ,int discrete ] ] ] )
NOTES
state is a 1-based state index for the object.
finish is a flag (0 or 1) which can be set to zero to improve performance when loading large numbers of objects, but you must call "finish_object" when you are done.
discrete is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the PDB files being loaded. discrete objects save memory but can not be edited.