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• Internal Gui
  The '''internal GUI''' is the GUI that is natively built into PyMOL. Hide the internal gui with,
  450 bytes (74 words) - 03:06, 28 March 2014
• Internal gui mode
  This sets how PyMOL renders the internal GUI & controls. The default setting, 0. Image:Ig_mode1.png|internal_gui_mode, set to 1. Notice the coloring under the controls.
  514 bytes (76 words) - 02:16, 28 March 2014
• Internal gui control size
  ...sets how large the internal gui controls are. An internal GUI control is the button you click on to enable/disable a protein, select colors, etc. # set the size to some positive integer
  540 bytes (79 words) - 03:06, 28 March 2014
• Internal feedback
  ...edback]] is the openGL-based command line area. Setting this to 0 removes the area; setting it to 1 makes one line visible (so you can see what you're ty # set the number of lines shown to 'int', where int is
  737 bytes (107 words) - 02:16, 28 March 2014
• PyMOLProbity
  [[File:PyMOLProbity_GUI.png|480px|thumb|right|The PyMOLProbity GUI can be used to inspect and adjust clashes and flip orientations of flippabl ...ps://github.com/jaredsampson/pymolprobity PyMOLProbity] is a plugin allows the user to produce MolProbity-style
  3 KB (425 words) - 03:23, 29 April 2019
• Ball and Stick
  ...esentation for certain selections, or roll their own hand-made versions of the command (see below). ====GUI====
  2 KB (319 words) - 21:08, 9 July 2015
• Keyboard Shortcut Menu
  ...e, modify, delete, and reset keyboard shortcuts. This functionality mimics the [[Set_Key]] function. The Keyboard Shortcut Menu is located in the "Setting" menu heading.
  1 KB (192 words) - 03:21, 22 June 2021
• Get Color Indices
  ...t_color_indices''' in combination with '''get_color_tuple''' will retrieve the RGB values for colors. will retrieve the Pymol color names and corresponding internal color indices. The Pymol names can be used to designate color for objects, see [[Color]]. To
  2 KB (273 words) - 19:27, 29 May 2018
• Full screen
  This determines if PyMOL takes up the entire desktop screen or not. ...e the "F" button in the bottom-right corner of the [[Internal_Gui|internal GUI]] to toggle full screen.
  434 bytes (71 words) - 02:16, 28 March 2014
• Builder
  The [[Builder]] is a PyMOL GUI menu that allows you to easily build up structures by hand from various ele To access the [[Builder]] simply select the "Builder" option from the PyMOL GUI (see images).
  2 KB (333 words) - 03:21, 22 June 2021
• Display scale factor
  ...ernal gui]], the [[internal prompt]], label fonts etc. by a multiple of 1. The setting was introduced to scale by a factor of 2 on high resolution [https: * '''--retina''' [[Command_Line_Options|command line option]] sets the factor to 2
  608 bytes (85 words) - 19:48, 29 May 2017
• Disable
  ...ing the object in the list in the top panel of the [[Internal_gui|Internal GUI]]. : the name of an object or a named selection (default="all")
  636 bytes (90 words) - 23:57, 20 May 2014
• Suspend updates
  ...never changes are made. This can be used to mask multiple operations from the user to make it appear as if only one operation occurred. See examples. # remove the waters
  668 bytes (98 words) - 23:57, 20 May 2014
• Properties Inspector
  ...properties and settings. It opens when clicking the "Properties" button in the upper right. Screenshot of PyMOL with the properties panel open, after applying "A > preset > pretty" to PDB 1rx1:
  636 bytes (86 words) - 03:05, 1 March 2021
• PluginArchitecture
  A plugin is a Python module which uses PyMOL's API. The following entrypoints add functionality to PyMOL: ...ugin__(app)</code>]] is called during plugin initialization (if defined by the plugin)
  4 KB (547 words) - 03:24, 10 December 2018
• Plugins Tutorial
  See the [[plugins]] page for how to install and use exisiting plugins. ...utorial shows how to write a PyMOL plugin with PyQt. '''The full source of the demo plugin is [https://github.com/Pymol-Scripts/pymol2-demo-plugin availab
  4 KB (636 words) - 03:42, 24 June 2019
• PyShifts
  Determining the structure of biomolecules is an important step in understanding how they ...biomolecule. Accordingly, chemical shifts are now routinely used to model the secondary and tertiary structure of proteins.
  5 KB (668 words) - 03:40, 3 February 2020
• Colorblindfriendly
  Certain colors are indistinguishable to people with the various forms of color blindness, and therefore are better not used in figu ...reference to consult when making all kinds of figures, not just those made using PyMOL.
  4 KB (585 words) - 04:50, 11 December 2017
• Views
  ...terface for store and recall the camera view. This plugin is an wrapper to the [[view]] command. ...option on the "Scene" menu (the last one). Double-click an entry to rename the view. Erase it's name to delete it.
  898 bytes (125 words) - 02:11, 24 November 2019
• Enable
  ...selecting the object in the list at the top of the [[Internal_gui|Internal GUI]]. : the name of an object or a named selection (default="all")
  886 bytes (130 words) - 23:57, 20 May 2014

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