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- 17:38, 2 October 2019 diff hist +23 Set Color Add link to missing set_object_color command page
- 04:07, 6 December 2018 diff hist +36 File:4gms colors.png formatting for script
- 04:04, 6 December 2018 diff hist +1,015 N File:4gms colors.png Prepared in response to a pymol-users thread from 11/30/2018-12/5/2018 about the appearance of transparency in a published figure. Script to reproduce: bg_color white fetch 4gms, async=0 # hemagglutinin selections select ha, chain A select l130, ha...
- 17:15, 8 October 2018 diff hist +184 Talk:MAC Install →Package managers: new section
- 17:05, 8 October 2018 diff hist +51 MAC Install →Pre-compiled: Make Homebrew the recommended package manager
- 17:01, 8 October 2018 diff hist -97 MAC Install →Pre-compiled: Update Homebrew info to reflect new location of PyMOL formula and no more need for flags in dependencies.
- 17:19, 8 March 2018 diff hist +16 Isomesh →USAGE: add units for "level" parameter
- 19:21, 15 November 2017 diff hist +253 Colorblindfriendly →Download the script and run locally: Add a "run from Github" example.
- 20:08, 26 October 2017 diff hist +291 Colorblindfriendly →Usage: Add instructions for running as dowloaded script.
- 19:50, 26 October 2017 diff hist -1 Colorblindfriendly →Usage: update code samples and use <code> instead of <tt> tags.
- 13:51, 26 October 2017 diff hist -3 Colorblindfriendly →Requirements: update to reflect support for older PyMOLs
- 04:42, 26 October 2017 diff hist -2 m Colorblindfriendly →Usage: fix object name for consistency
- 04:41, 26 October 2017 diff hist +1,281 Colorblindfriendly →Usage: Update usage for version 0.2; Add requirements section.
- 04:04, 26 October 2017 diff hist -35 Colorblindfriendly →Colors: show 0-255 values instead.
- 02:25, 26 October 2017 diff hist +116 Get Color Indices add reference to Get_color_index
- 02:23, 26 October 2017 diff hist +141 Get color index Add See Also and Categories
- 02:21, 26 October 2017 diff hist +226 N Get color index Create page
- 00:26, 29 July 2017 diff hist +5 Selection Algebra →Selection Operator/Modifier Table: fix vertical line display for "or" operator
- 04:19, 16 January 2017 diff hist +47 PyMOLProbity →Description: add link to repository
- 17:48, 14 January 2017 diff hist +200 PyMOLProbity →Getting Started: Update GUI section.
- 17:41, 14 January 2017 diff hist +5 PyMOLProbity Add screenshot.
- 05:52, 14 January 2017 diff hist +2,538 N PyMOLProbity Created page.
- 19:07, 3 October 2016 diff hist +6 Save Add COLLADA (.dae) to autodetected formats.
- 19:42, 7 June 2016 diff hist +8 m PYMOL PATH →Contents: close <tt> tag
- 18:01, 7 June 2016 diff hist +911 User:Jaredsampson Update
- 17:31, 7 June 2016 diff hist +341 Linux Install →Get latest source from SVN: Add HTTP protocol as alternative to troubleshoot sf.net SVN connection.
- 05:44, 28 March 2016 diff hist +124 Cartoon →Various Transparency Levels: include mention of "extract"
- 06:19, 26 February 2016 diff hist +19 COLLADA Include first version to support COLLADA.
- 16:36, 2 December 2015 diff hist -1,602 Selection Algebra →Selection Operator/Modifier Table: converted to wiki markup and made several minor edits (e.g. periods at end of "effect" column sentences.)
- 04:28, 10 November 2015 diff hist +372 MAC Install →With xquartz intalled: This is untested, but just updating the flags to the current syntax listed in the homebrew/homebrew-science/pymol.rb formula.
- 04:19, 10 November 2015 diff hist -250 MAC Install →Switch stereo: Renamed section, and rewrote most of the content because latest homebrew install no longer switches the stereo/mono paradigm as previously described.
- 04:08, 10 November 2015 diff hist -75 MAC Install →3. Install PyMOL.: latest version doesn't require multiple install commands--everything is handled by the install script (apparently)
- 04:06, 10 November 2015 diff hist +153 MAC Install →2. Install Xquartz.: add homebrew cask option to install Xquartz
- 03:17, 30 August 2015 diff hist -1 PYMOL PATH →Contents: typo
- 19:18, 29 August 2015 diff hist +21 Plugin Manager add Plugins category
- 21:36, 13 August 2015 diff hist +40 Plane Wizard Improve handling of auto_zoom setting (store original setting, then re-set it).
- 03:22, 8 June 2015 diff hist +158 Plugins →Using Fink: Change title of section to reflect additonal package managers. Fix link for Fink, add links for MacPorts and Homebrew. Update install example to refer to pymol-py27 fink package and remove unnecessary tags.
- 21:02, 7 June 2015 diff hist +8 Pytms Correct link to raw plugin file in repo.
- 20:41, 7 June 2015 diff hist +21 Pytms Add plugins category.
- 22:52, 20 May 2015 diff hist +2,502 N Collada geometry mode Created
- 16:21, 20 May 2015 diff hist +3 Modeling and Editing Structures →Adding and using your own fragments: clarified that editing modules/pmg_tk/skins/normal/__init__.py would add a menu item, not a hotkey.
- 14:31, 6 May 2015 diff hist -8 Mset →EXAMPLES: fixed python comments to use # instead of //
- 16:12, 16 April 2015 diff hist +161 MAC Install →3. Install PyMOL.: Added sentence to indicate the end of the installation process.
- 16:08, 16 April 2015 diff hist +31 MAC Install →1. Install homebrew.: updated homebrew install command per https://developer.github.com/changes/2014-04-25-user-content-security/
- 22:52, 29 September 2014 diff hist +3,624 N COLLADA Created page
- 21:54, 13 August 2014 diff hist -23 User:Jaredsampson
- 18:47, 13 August 2014 diff hist +128 Elbow angle →Syntax: added rationale for default limit residues
- 19:00, 12 August 2014 diff hist +159 Cealign plugin →Comparison to PyMol: Whoops...fixed text to go with image order. Added PDB links.
- 19:00, 12 August 2014 diff hist +159 Cealign →Comparison to PyMol: Whoops...fixed text to go with image order. Added PDB links.
- 18:49, 12 August 2014 diff hist 0 m Cealign plugin →Comparison to PyMol: switched order of images for logical flow (align, then cealign)
- 18:49, 12 August 2014 diff hist 0 m Cealign →Comparison to PyMol: switched order of images for logical flow (align, then cealign)
- 17:08, 28 July 2014 diff hist +60 Outline →Example: added "Automation" heading. Added `outfile` variable in imagemagick script, and adjusted filenames for consistency.
- 16:51, 24 July 2014 diff hist +1,644 N Outline Created page
- 16:50, 28 June 2014 diff hist +34 Get View →SEE ALSO: added Model_Space_and_Camera_Space
- 16:14, 28 June 2014 diff hist +5 Move
- 13:36, 28 June 2014 diff hist 0 m View →Function Key Presets: capitalized title
- 13:35, 28 June 2014 diff hist +15 View →VIEWS: made section title reflect contents
- 17:17, 5 June 2014 diff hist +16 Ray opaque background →Examples: eliminated abbreviation in setting name
- 17:16, 5 June 2014 diff hist +84 Png →Transparent Backgrounds: added example of ray_opaque_background setting
- 17:11, 5 June 2014 diff hist +36 Png →DPI Setting: updated to account for integrated width, height, and ray arguments
- 17:06, 5 June 2014 diff hist +485 Png →USAGE: updated with additional parameters
- 17:01, 5 June 2014 diff hist +57 Png →PYMOL API: updated API to match `help png` output and include defaults
- 16:56, 5 June 2014 diff hist +43 Png →USAGE: added brackets and defaults for keyword arguments
- 16:52, 5 June 2014 diff hist -19 Optimize →Local optimization: moved image to top of section, added Usage heading
- 16:46, 5 June 2014 diff hist +404 Optimize →Local optimization: fixed a few typos, added default values from script, added PyMOL API section.
- 23:15, 11 April 2014 diff hist +11 Enable changed to definition list format
- 22:51, 11 April 2014 diff hist +206 Disable added examples, improved description, added default='all'
- 22:42, 11 April 2014 diff hist +443 Enable Added more examples and description of `parents` argument.
- 16:30, 9 April 2014 diff hist -1 Morph fix typo
- 15:14, 28 February 2014 diff hist +2,131 N Colorblindfriendly Added basic page for Colorblindfriendly.py script
- 21:01, 25 February 2014 diff hist +730 MAC Install →PyMOL in brew: Updated homebrew link. Expanded installation section. Added "brew tap homebrew/dupes", which enables Tcl/Tk installation.
- 17:32, 19 February 2014 diff hist +383 Model Space and Camera Space Added links to other PW pages. Removed unnecessary line breaks. Updated some language for clarity.
- 16:29, 19 February 2014 diff hist +380 N Talk:Translate Questioning two statements in the Notes section
- 16:12, 19 February 2014 diff hist +4 m Translate →EXAMPLES: Added example numbers. Moved Example 1 description below its heading.
- 16:09, 19 February 2014 diff hist -94 Translate →ARGUMENTS: corrected list of arguments from 1.7.0.0 `help translate`
- 19:49, 5 January 2014 diff hist +1,062 N Geometry export mode Added basic description, example, and syntax for geometry_export_mode setting.
- 19:26, 5 January 2014 diff hist +256 Settings added alphabetic index for easier browsing
- 19:10, 5 January 2014 diff hist -241 Template:Columns-list Blanked the page
- 19:09, 5 January 2014 diff hist +241 N Template:Columns-list Created page with "<includeonly>{{div col | cols = {{{cols|{{{1|}}}}}} | colwidth = {{{colwidth|}}} | rules = {{{rules|}}} | small = {{{small|}}} | style = {{{style|}}} | content = {{{2|{{{1|..."
- 18:19, 1 January 2014 diff hist +22 N Set view redirect to existing page
- 18:17, 1 January 2014 diff hist +26 N Count states redirect to existing page
- 18:15, 1 January 2014 diff hist +22 N Get view redirect to existing page
- 18:14, 1 January 2014 diff hist +18 m Gallery fix broken links to Get_View
- 14:54, 21 November 2013 diff hist -3 m Save →SEE ALSO
- 14:54, 21 November 2013 diff hist +162 Save →Details: updated list of auto-detected formats [from modules/pymol/exporting.py]; added default state = -1
- 14:42, 21 November 2013 diff hist +3,662 N Load →SEE ALSO
- 14:19, 21 November 2013 diff hist +77 m Practical Pymol for Beginners →The Python MiniShell: corrected typo, added <code> tags to commands instead of bold font weight
- 14:03, 21 November 2013 diff hist 0 m Practical Pymol for Beginners changed capitalization of PyMOL
- 17:41, 6 November 2013 diff hist +37 Elbow angle →Basic usage: added link to COM
- 17:32, 6 November 2013 diff hist +33 Average b →code: adjusted string outputs to use string formatting instead of concatenation; adjusted whitespace around operators
- 19:24, 29 October 2013 diff hist +169 Get Names added "how to tell whether or not object is enabled" as posted by Jason on pymol-users
- 17:08, 10 October 2013 diff hist 0 m Fuse fix typo
- 04:56, 18 September 2013 diff hist +1 m MAC Install →PyMOL Install from Source, Using Fink: fixed typo
- 15:46, 2 August 2013 diff hist +2 m Command Line Options fixed typos
- 23:09, 26 April 2013 diff hist +754 Covers added Structure Nov 2009 cover. Began to sort by year and suggested a standardized format: Image|Description [link ''Journal'', Volume, Issue, Date].
- 15:56, 26 April 2013 diff hist +136 N File:20091111 Structure cover.jpg Cover of the 11 November 2009 issue of Structure. Artwork by Jared Sampson, Xiangpeng Kong lab, New York University School of Medicine.
- 21:01, 5 October 2012 diff hist +23 Elbow angle →Syntax
- 16:35, 6 July 2012 diff hist +15 Git install scripts →Adding Pymol-script-repo to PyMOL search path: clarified date of rev 3997
- 19:14, 15 June 2012 diff hist +22 Elbow angle →Included Example: added user link
- 19:13, 15 June 2012 diff hist -2 Elbow angle changed release license to BSD