Difference between revisions of "Main Page"

Latest revision as of 03:21, 22 June 2021

hosted by

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellows announced for 2018-2019
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...
Mview The mview command can store and delete movie keyframes. Keyframes store a view (camera or object position) and optionally the object state and/or a scene. Between keyframes, PyMOL will interpolate views and states, allowing for smooth animations. Before using mview, the movie timeline has to be set up with mset. Usage mview [ action [, first [, last [, power [, bias [, simple [, linear [, object [, wrap [, hand [, window [, cycles [, scene [, cut [, quiet [, auto [, state [, freeze ]]]]]]]]]]]]]]]]]] Arguments action = str: one of store, clear, reset, purge, interpolate, uninterpolate, reinterpolate, toggle, toggle_interp, smooth {default: store} first = int: frame number or 0 for current frame {default: 0} power = float: slow down animation at keyframe (0.0) or not (1.0) {default: 0.0} object = str: name of object for object keyframes, or empty for global (camera) keyframes {default: } scene = str: name of scene to store scene with key frame ..→

A Random PyMOL-generated Cover. See Covers.

Difference between revisions of "Main Page"

Latest revision as of 03:21, 22 June 2021

Mview

Usage

Arguments

Navigation menu

Search

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-== PyMol Wiki Home ==
+__NOTOC__
-You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.
+{| align="center" width="100%" style="background: #B22222; margin-bottom: 4em; border-bottom: 1px solid #B22222; border-left: 1px solid #B22222; border-right: 1px solid #B22222;"
+|+ style="font-size: 1.0em; font-weight: normal; color: #FFFFFF; text-align:right; background: #B22222; padding-top:0.5em; padding-bottom: 0.25em; padding-right: 0.60em; border-top: 2px solid #B22222; border-bottom: 1px solid #fff;" |hosted by [[File:SBGridlogo2.jpg|140 px|link=https://sbgrid.org/]]
-We provide
+|}
-* updates on [http://pymol.sf.net PyMol]
+{| align="center" style="padding-bottom: 3em;"
-* a stable user-oriented documentation base
+|+ style="font-size:210%; font-weight: bold; color:#000000; text-align:center; padding: 5px; margin-bottom: 4px;" | Welcome to the PyMOL Wiki!
-* a thorough treatment of the PyMol program
+|- style="text-align:center; font-weight: normal; color: #000000; font-size: 120%; font-family: sans-serif;"
-* feature-rich scripts for general PyMol use
+| The community-run support site for the [http://pymol.org PyMOL] molecular viewer.
+|- style="text-align:center; font-weight:normal; color: #000000; font-size: 120%; font-family: sans-serif;"
-==News==
+| To request a new account, email SBGrid at:  accounts (@) sbgrid dot org
-* New PyMol Features: [[Examples_of_cartoon_ring_and_cartoon_ladder_settings|Nucleic Acid Representation Settings]] & Examples.
+|- style="text-align:center; font-weight:bold; color: #000000; font-size: 120%; font-family: sans-serif;"
-* Cool new Plug-In: [[Show_NMR_constrains| Show NMR Constrains]].
+|}
-* Check out PyMol's new [[Cartoon#Nucleic_Acid_Representation|Nucleic Acid Rendering]]
-* Added [[DynoPlot]] script for plotting data within PyMol; an interactive Ramachandran plot.
-* Added [[Kabsch]] script for optimal alignment of two sets of vectors.
-* Some details have been released about [[0.99beta11]]'s release and new features.
-* A new map function is in the beta build, [[Map_Trim]].
-* Details on how to build [[Peptide_Sequence| peptide sequences]] and [[Nucleic_Acid_Sequence| nucleic acid sequences]] by hand.
-* New [[Transform_odb]] script to transform coordinates with .odb file from O or LSQMAN
-See our [[Older_News]].
-== Links of Interest ==
-* [[TOPTOC|Top Level Table of Contents]]
-* [[:Category:FAQ|Frequently Asked Questions]] -- new!
-* [[PyMolWiki:Community_Portal| How to get involved!]] -- read me if you want to add something
-* [[:Category:Script Library| Script Library]] -- add one! (rTools info!)
-* [[:Category:Commands|PyMol Commands]] (>130 documented!)
-* [[:Special:Allpages| All Pages]]
-* [[:Category:Plugins|Plugins]]
-* [[:Special:Categories| See All Categories]]
+{| align="center" width="45%" style="background: #FFFFFF; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;"
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+|-
+| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Tutorials|Tutorials]]''' || '''[[TOPTOC|Table of Contents]]''' || '''[[:Category:Commands|Commands]]'''
+|-
+| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Script_Library|Script Library]]''' || '''[[:Category:Plugins|Plugins]]''' || '''[[:Category:FAQ|FAQ]]'''
+|-
+| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]'''
+||'''[[CheatSheet|PyMOL Cheat Sheet]]''' (''[[Media:PymolRef.pdf|PDF]]'')
+||'''[[PyMOL_mailing_list|Getting Help]]'''
+|}
+{| width="100%"
+| style="vertical-align: top; width: 40%" |
+{| class="jtable" style="float: left; width: 90%;"
+|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
+|-
+! Official Release
+| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
+|-
+! Python 3
+| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
+|-
+! POSF
+| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
+|-
+! Tutorial
+| [[Plugins Tutorial]] updated for PyQt5
+|-
+! New Plugin
+| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
+|-
+! Selection keywords
+| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
+|-
+! Plugin Update
+| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
+|-
+! New Script
+| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
+|-
+! Older News
+| See [[Older_News|Older News]].
+|}
+|style="vertical-align: top; width: 40%"|
+{| class="jtable" style="float: right; width: 90%"
+|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" |Did you know...
+|-
+|<div class="didyouknow" >
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