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! Official Release
 
! Official Release
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| [https://pymol.org PyMOL v2.2 has been released] on July 24, 2018.
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
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! Python 3
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
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! POSF
 
! POSF
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| [https://pymol.org/fellowship PyMOL Open-Source Fellowship program] accepting applications for 2018-2019
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
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! Tutorial
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| [[Plugins Tutorial]] updated for PyQt5
 
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! New Plugin
 
! New Plugin
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| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! Selection keywords
 
! Selection keywords
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! New Script
 
! New Script
 
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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! New Plugin
 
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| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
 
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! New Plugin
 
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| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
 
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! New Plugin
 
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| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
 
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! New Plugin
 
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
 
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! 3D using Geforce
 
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| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 
 
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! Older News
 
! Older News

Latest revision as of 03:21, 22 June 2021

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Split Object Along Axis

== Overview ==

I have a number of small molecules that I am looking at. Many of these small molecules have distinct sections which are connected by a single bond. In a separate program I am writing, I would like to rotate each section around the given bond. I wanted a script that would allow me to select a bond, and then generate 2 selections: one for the selection of all atoms that are on one side of this bond, and the other selection for the atoms on the other side of the bond. If there is a 2nd bond which connects the 2 sections of atoms, the script will still run and terminate, but the two selections won't make much sense!

To use, just call splitObjAlongAxis(axisSelection, outFileName) where: axisSelection is a selection that includes 2 atoms. These atoms define the axis which we are splitting across. outFileName is an optional file name where the script will spit three lines. The first line will be the two atom id's of the axis. The second line will be a list of atom id's in the selection generated, and the third line ..→

A Random PyMOL-generated Cover. See Covers.


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