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Revision as of 04:43, 1 May 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

FetchLocal

== Overview ==

Try fetching local copy of PDB files before going on internet to fetch a remote copy.

Sometimes you have a local copy of the PDB structure files, or biological unit files. They are, however, usually organized into sub-directories (for a good reason). Setting Fetch_Path to the top directory will not make PyMOL to use local files before go on internet to fetch a remote copy. This script extends the functionality of the PyMOL command Fetch by searching local sub-directories for target files first.

The search order of the script: 1. local copy of PDB; 2. Fetch_Path; 3. remote repository (Fetch_Host).

Note

The script only copes with .pdb and .pdb1 (or .pdb2, .pdb3, ...) file types.

Syntax

See Fetch

The Code

<source lang="python">

""" 2012_09_18, Hongbo Zhu <hongbo.zhu.cn gmail>

   DESCRIPTION: Look for pdb* on local disk before fetching  ..→
A Random PyMOL-generated Cover. See Covers.