This is a read-only mirror of pymolwiki.org

Colorblindfriendly

From PyMOL Wiki
Revision as of 04:04, 26 October 2017 by Jaredsampson (talk | contribs) (→‎Colors: show 0-255 values instead.)
Jump to navigation Jump to search
Type Python Script
Download colorblindfriendly.py
Author(s) Jared Sampson
License MIT
This code has been put under version control in the project Pymol-script-repo


Introduction

Certain colors are indistinguishable to people with the various forms of color blindness, and therefore are better not used in figures intended for public viewing.

This script generates a palette of named colors for PyMOL that are unambiguous both to colorblind and non-colorblind individuals.

The colors listed here are defined according to recommendations found at J*FLY. This website is a good reference to consult when making all kinds of figures, not just those made using PyMOL.


Colors

These are the 0-255 RGB values from the J*FLY page that are used in the script, with the defined color names and alternate names.

  name R G B alternate names
  cb_black 0 0 0
  cb_orange 230 159 0
  cb_sky_blue 86 180 233 cb_skyblue, cb_light_blue, cb_lightblue
  cb_bluish_green 0 158 115 cb_bluishgreen, cb_green
  cb_yellow 240 228 66
  cb_blue 0 114 178
  cb_vermillion 213 94 0 cb_red, cb_red_orange, cb_redorange
  cb_reddish_purple 204 121 167 cb_rose, cb_violet, cb_magenta

Usage

Use these color names just like any other named color, using the color command:

import colorblindfriendly
color cb_skyblue, all