This is a read-only mirror of pymolwiki.org

Difference between revisions of "Category talk:Script Library"

From PyMOL Wiki
Jump to navigation Jump to search
m (23 revisions)
 
(21 intermediate revisions by 9 users not shown)
Line 1: Line 1:
 +
= Requests =
 +
== Introduction ==
 +
Please place your PyMOL script requests here.  A few other people might have the same request and someone might just code it up for free (viz. all these other scripts).  There are no guarantees that someone will write your script, but it doesn't hurt asking.
  
<div style=&quot;overflow: auto; height: 1px;&quot;>
+
'''ExampleScriptTitle'''
[http://b2.boards2go.com/boards/board.cgi?user=phentermine    Buy Phentermine]
+
:: Example text of what the new awesome script is supposed to do in PyMOL. Consider posting some contact information, so once the script is posted you are apprised.
[http://b2.boards2go.com/boards/board.cgi?user=buytramadol    Buy Tramadol]
 
[http://b2.boards2go.com/boards/board.cgi?user=oxycontin    Buy Oxycontin]
 
[http://4allfree.com/cgi/gb.id?hydrocodoner    buy hydrocodone]
 
</div>
 
  
 +
== List of Requested Scripts ==
  
 +
'''Dang Reader'''
 +
:: It would be nice if PyMOL could read in and visualize the Dangle (http://kinemage.biochem.duke.edu/software/dangle.php) colon delimited output or be scripted to reproduce the actual data itself for visualization.
  
  
 +
==Instruction request==
 +
Would it be possible to add short instructions to category page for new users how to run scripts in pymol...(?)
  
 +
Maybe this helps: [[Running_Scripts]] (I didn't dare to edit the nice yellow table :-) ) --[[User:Karo|Karo]] 11:19, 5 August 2010 (UTC)
  
 +
= Policy =
 +
== Rules ==
 +
We want the script library to be as valuable as possible to the public.  Therefore, please follow these rules when posting code to the wiki:
 +
* Only post code if you have the legal right to do so
 +
* All posted code must be released under some [http://www.opensource.org/licenses|open source license] or freer (public domain).
 +
** Authors may maintain copyright
 +
** Only post links to code that is not open source licensed, do not copy it onto the wiki
  
 +
== Depositing Scripts ==
 +
* Create a new page for your script
 +
* Please provide
 +
** an overview of what the script does
 +
** any usage comments or hints
 +
** the source code
 +
* Please add the following to the bottom of your new page:<br><nowiki>[[Category:Script_Library]]
 +
[[Category:PUT_SUBCATEGORY_NAME_HERE]]</nowiki>
  
  
 +
= General Notes =
 +
== Notes ==
 +
* Feel free to add scripts (see [[#Rules|rules]] below).
 +
* Feel free to add new categories
 +
* You can make script requests on this page's discussion page
 +
* [https://github.com/Pymol-Scripts/Pymol-script-repo GIT Repository] of all our scripts: <source lang="python">git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git</source>
  
 +
== GitHub for Pymol-scripts==
 +
I created a github for the pymol scripts. I think this is a good way to to collect and enlarge the collection of scripts. The repo is public accessible so contribute. If you need help on git just write me an email.
  
 
+
https://github.com/Pymol-Scripts/Pymol-script-repo
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
<div style="overflow: auto; height: 1px;">
 
[http://buy-ativan.fil.ph/ativan-manufacturer.html  ativan manufacturer]
 
[http://buy-ativan.fil.ph/cheap-ativan-online.html  cheap ativan online]
 
[http://buy-ativan.fil.ph/ativan-dosage.html  ativan dosage]
 
[http://buy-ativan.fil.ph/ativan-information.html  ativan information]
 
[http://buy-ativan.fil.ph/buy-ativan.html  buy ativan]
 
[http://buy-ativan.fil.ph/ativan-dose.html  ativan dose]
 
[http://buy-ativan.fil.ph/ativan-2mg.html  ativan 2mg]
 
[http://buy-ativan.fil.ph/ativan-long-term-effects.html  ativan long term effects]
 
[http://buy-ativan.fil.ph/long-term-use-ativan.html  long term use ativan]
 
[http://buy-ativan.fil.ph/ativan-picture.html  ativan picture]
 
[http://buy-ativan.fil.ph/ativan-home-home-manufacturer-page-page.html  ativan for seizure]
 
[http://buy-ativan.fil.ph/buy-ativan-online.html  buy ativan online]
 
[http://buy-ativan.fil.ph/ativan-data.html  ativan data]
 
[http://buy-ativan.fil.ph/how-to-take-ativan.html  how to take ativan]
 
[http://buy-ativan.fil.ph/ativan-vs-xanax.html  ativan vs xanax]
 
[http://buy-ativan.fil.ph/ativan-info.html  ativan info]
 
[http://buy-ativan.fil.ph/ativan-for-sleep.html  ativan for sleep]
 
[http://buy-ativan.fil.ph/ativan-1-mg.html  ativan 1 mg]
 
[http://buy-ativan.fil.ph/generic-ativan.html  generic ativan]
 
[http://buy-ativan.fil.ph/ativan-used-for.html  ativan used for]
 
[http://buy-ativan.fil.ph/online-ativan-prescription.html  online ativan prescription]
 
[http://buy-ativan.fil.ph/ativan-suicide.html  ativan suicide]
 
[http://buy-ativan.fil.ph/ativan-withdrawal-symptom.html  ativan withdrawal symptom]
 
[http://buy-ativan.fil.ph/ativan-and-breast-feeding.html  ativan and breast feeding]
 
[http://buy-ativan.fil.ph/ativan-withdrawl-symptom.html  ativan withdrawl symptom]
 
[http://buy-ativan.fil.ph/ativan-dosing.html  ativan dosing]
 
[http://buy-ativan.fil.ph/ativan-side-effects.html  ativan side effects]
 
[http://buy-ativan.fil.ph/prescription-ativan.html  prescription ativan]
 
[http://buy-ativan.fil.ph/ativan-complication.html  ativan complication]
 
[http://buy-ativan.fil.ph/correct-dosage-of-ativan.html  correct dosage of ativan]
 
[http://buy-ativan.fil.ph/ativan-effects.html  ativan effects]
 
[http://buy-ativan.fil.ph/difference-between-xanax-and-ativan.html  ativan for seizure]
 
[http://buy-ativan.fil.ph/canadian-ativan.html  canadian ativan]
 
[http://buy-ativan.fil.ph/ativan-vs-valium.html  ativan vs valium]
 
[http://buy-ativan.fil.ph/ativan-and-drug-interaction.html  ativan and drug interaction]
 
[http://buy-ativan.fil.ph/ativan-tablet.html  ativan tablet]
 
[http://buy-ativan.fil.ph/ativan-overdose.html  ativan overdose]
 
[http://buy-ativan.fil.ph/ativan-brain-causing-damage-permanent.html  ativan for seizure]
 
[http://buy-ativan.fil.ph/ativan-alzheimers.html  ativan alzheimers]
 
[http://buy-ativan.fil.ph/ativan-withdrawl.html  ativan withdrawl]
 
[http://buy-ativan.fil.ph/snorting-ativan.html  snorting ativan]
 
[http://buy-ativan.fil.ph/ativan-drug-test.html  ativan drug test]
 
[http://buy-ativan.fil.ph/ativan-child.html  ativan child]
 
[http://buy-ativan.fil.ph/ativan-benefit.html  ativan benefit]
 
[http://buy-ativan.fil.ph/ativan-side-site.html ativan side site]
 
[http://buy-ativan.fil.ph/ativan-and-pregnancy.html  ativan and pregnancy]
 
[http://buy-ativan.fil.ph/ativan-benefits.html  ativan benefits]
 
[http://buy-ativan.fil.ph/ativan-for-nausea.html  ativan for nausea]
 
[http://buy-ativan.fil.ph/cheap-ativan.html  cheap ativan]
 
[http://buy-ativan.fil.ph/ativan-and-alcohol-withdrawal.html  ativan and alcohol withdrawal]
 
[http://buy-ativan.fil.ph/zoloft-and-ativan.html  zoloft and ativan]
 
[http://buy-ativan.fil.ph/ativan-1mg.html  ativan 1mg]
 
[http://buy-ativan.fil.ph/ativan-for-depression.html  ativan for depression]
 
[http://buy-ativan.fil.ph/ativan-withdrawal.html  ativan withdrawal]
 
[http://buy-ativan.fil.ph/ativan-use.html  ativan use]
 
[http://buy-ativan.fil.ph/ativan-use-mitral-valve-disease.html  ativan use mitral valve disease]
 
[http://buy-ativan.fil.ph/ativan-addiction.html  ativan addiction]
 
[http://buy-ativan.fil.ph/ativan-overnight-delivery.html  ativan overnight delivery]
 
[http://buy-ativan.fil.ph/ativan-domain.html  ativan domain]
 
[http://buy-ativan.fil.ph/what-is-ativan.html  what is ativan]
 
[http://buy-ativan.fil.ph/ativan-no-prescription.html  ativan no prescription]
 
[http://buy-ativan.fil.ph/ativan-buy-lorazepam.html  ativan buy lorazepam]
 
[http://buy-ativan.fil.ph/ativan-during-pregnancy.html  ativan during pregnancy]
 
[http://buy-ativan.fil.ph/ativan.html  ativan]
 
[http://buy-ativan.fil.ph/ativan-pill.html  ativan pill]
 
</div>
 

Latest revision as of 01:30, 28 March 2014

Requests

Introduction

Please place your PyMOL script requests here. A few other people might have the same request and someone might just code it up for free (viz. all these other scripts). There are no guarantees that someone will write your script, but it doesn't hurt asking.

ExampleScriptTitle

Example text of what the new awesome script is supposed to do in PyMOL. Consider posting some contact information, so once the script is posted you are apprised.

List of Requested Scripts

Dang Reader

It would be nice if PyMOL could read in and visualize the Dangle (http://kinemage.biochem.duke.edu/software/dangle.php) colon delimited output or be scripted to reproduce the actual data itself for visualization.


Instruction request

Would it be possible to add short instructions to category page for new users how to run scripts in pymol...(?)

Maybe this helps: Running_Scripts (I didn't dare to edit the nice yellow table :-) ) --Karo 11:19, 5 August 2010 (UTC)

Policy

Rules

We want the script library to be as valuable as possible to the public. Therefore, please follow these rules when posting code to the wiki:

  • Only post code if you have the legal right to do so
  • All posted code must be released under some source license or freer (public domain).
    • Authors may maintain copyright
    • Only post links to code that is not open source licensed, do not copy it onto the wiki

Depositing Scripts

  • Create a new page for your script
  • Please provide
    • an overview of what the script does
    • any usage comments or hints
    • the source code
  • Please add the following to the bottom of your new page:
    [[Category:Script_Library]] [[Category:PUT_SUBCATEGORY_NAME_HERE]]


General Notes

Notes

  • Feel free to add scripts (see rules below).
  • Feel free to add new categories
  • You can make script requests on this page's discussion page
  • GIT Repository of all our scripts:
    git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git
    

GitHub for Pymol-scripts

I created a github for the pymol scripts. I think this is a good way to to collect and enlarge the collection of scripts. The repo is public accessible so contribute. If you need help on git just write me an email.

https://github.com/Pymol-Scripts/Pymol-script-repo