This is a read-only mirror of

Difference between revisions of "Autodock plugin"

From PyMOL Wiki
Jump to navigation Jump to search
Line 23: Line 23:
[[User:Dseelig|Daniel Seeliger]]
[[User:Dseelig|Daniel Seeliger]]
== Python Code ==

Revision as of 16:10, 4 December 2011


This plugin should help to set up docking runs with Autodock and view docking results. It has two features:

  1. Setup of a docking grid for Autodock with PyMOL.
  2. View the docking results.


The plugin is now automatically available in the project Pymol-script-repo.
It is available only with the the Vina executable, since it has been found that Vina is orders of magnitudes faster than Autodock4.

Or you can download it manually

  1. Download plugin
  2. PyMOL > Plugin > Install Plugin
  3. MGLTools/AutoDockTools
  4. AutoDock4.2
  5. AutoDock Vina

Tutorial Video

Watch Dan Seeliger's autodock plugin tutorial.


Daniel Seeliger