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| Type | Python Module |
|---|---|
| Download | show_bumps.py |
| Author(s) | Thomas Holder |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.
This is a script to visualize VDW clashes, just like the mutagenesis wizard does.
Posted on pymol-users mailing list.
Usage
show_bumps [ selection [, name ]]
Related Settings
- sculpt_vdw_vis_max (default: 0.3)
- sculpt_vdw_vis_mid (default: 0.1)
- sculpt_vdw_vis_min (default: -0.1)