Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

This is a read-only mirror of pymolwiki.org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	GoogleSearch

News & Updates Official Release PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 3, 2014. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014. Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... The DPL extension (version 2.3.0) produced a SQL statement which lead to a Database error. The reason may be an internal error of DPL or an error which you made, especially when using DPL options like titleregexp. Query text is: SELECT DISTINCT `page`.page_namespace AS page_namespace,`page`.page_title AS page_title,`page`.page_id AS page_id, `page`.page_title AS sortkey, `page`.page_counter AS page_counter FROM `page` INNER JOIN `categorylinks` AS cl0 ON `page`.page_id=cl0.cl_from AND (cl0.cl_to='Commands' OR cl0.cl_to='Plugins' OR cl0.cl_to='Script_Library' OR cl0.cl_to='Settings') WHERE 1=1 AND `page`.page_namespace IN (0) AND `page`.page_is_redirect=0 ORDER BY page_title ASC LIMIT 500 OFFSET 0 Error message is: Unknown column 'page.page_counter' in 'field list' (data01-pymol.chw7f2hgrkps.us-west-2.rds.amazonaws.com)

A Random PyMOL-generated Cover. See Covers.