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'''translate''' can be used to translate the atomic coordinates of a molecular object (move an object). Behavior differs depending on whether or not the "object" parameter is specified. | '''translate''' can be used to translate the atomic coordinates of a molecular object (move an object). Behavior differs depending on whether or not the "object" parameter is specified. | ||
| − | If object is None, then translate translates atomic coordinates according to the vector provided for the selection and in the state provided | + | If object is None, then translate translates atomic coordinates according to the vector provided for the selection and in the state provided. |
| − | If object is set to an object name, then selection and state are ignored and instead of translating the atomic coordinates, the object | + | If object is set to an object name, then selection and state are ignored and instead of translating the atomic coordinates, the [[Object_Matrix|object matrix]] is modified. This option is intended for use in animations. |
| − | The "camera" option controls whether the camera or the model's axes are used to interpret the translation vector. | + | The "camera" option controls whether the camera or the model's axes are used to interpret the translation vector. To move the object relative to the camera set '''camera=1''' (which is default), or to move the molecule relative to the model's geometry, set, '''camera=0'''. |
===USAGE=== | ===USAGE=== | ||
| + | <source lang="python"> | ||
| + | translate vector [,selection [,state [,camera [,object ]]]] | ||
| + | </source> | ||
| + | |||
| + | ===ARGUMENTS=== | ||
| + | '''vector''' | ||
| + | ::float vector: [x, y, z] translation vector | ||
| + | |||
| + | '''selection''' | ||
| + | :: string: atoms whose coordinates should be modified {default: all} | ||
| + | |||
| + | '''state''' | ||
| + | :: state > 0: only the indicated state is modified | ||
| + | :: state = 0: all states are modified | ||
| + | :: state = -1: only current state is modified {default} | ||
| + | |||
| + | '''camera''' | ||
| + | :: 0 or 1: is the vector in camera coordinates? {default: 1 (yes)} | ||
| − | + | '''object''' | |
| + | :: string: object name (only if rotating object matrix) {default: None} | ||
===PYMOL API=== | ===PYMOL API=== | ||
| Line 19: | Line 37: | ||
===EXAMPLES=== | ===EXAMPLES=== | ||
| + | ====Example 1==== | ||
A simple example; just move the alpha-carbons one Ang. along the X-axis. | A simple example; just move the alpha-carbons one Ang. along the X-axis. | ||
| − | |||
<source lang="python"> | <source lang="python"> | ||
# move the alpha carbons one Ang. on the X-axis | # move the alpha carbons one Ang. on the X-axis | ||
| Line 26: | Line 44: | ||
</source> | </source> | ||
| − | ====Example==== | + | ====Example 2==== |
A slightly more complicated example. Load two proteins, align them, and then move one away from the other to see their similarities separately. | A slightly more complicated example. Load two proteins, align them, and then move one away from the other to see their similarities separately. | ||
<source lang="python"> | <source lang="python"> | ||
| Line 48: | Line 66: | ||
===SEE ALSO=== | ===SEE ALSO=== | ||
| − | [[Rotate]], [[Move]] | + | [[Rotate]], [[Move]], [[Model_Space_and_Camera_Space]] |
| − | [[Category:Commands| | + | [[Category:Commands|Translate]] |
| + | [[Category:States|Translate]] | ||
Latest revision as of 01:44, 28 March 2014
translate can be used to translate the atomic coordinates of a molecular object (move an object). Behavior differs depending on whether or not the "object" parameter is specified.
If object is None, then translate translates atomic coordinates according to the vector provided for the selection and in the state provided.
If object is set to an object name, then selection and state are ignored and instead of translating the atomic coordinates, the object matrix is modified. This option is intended for use in animations.
The "camera" option controls whether the camera or the model's axes are used to interpret the translation vector. To move the object relative to the camera set camera=1 (which is default), or to move the molecule relative to the model's geometry, set, camera=0.
USAGE
translate vector [,selection [,state [,camera [,object ]]]]
ARGUMENTS
vector
- float vector: [x, y, z] translation vector
selection
- string: atoms whose coordinates should be modified {default: all}
state
- state > 0: only the indicated state is modified
- state = 0: all states are modified
- state = -1: only current state is modified {default}
camera
- 0 or 1: is the vector in camera coordinates? {default: 1 (yes)}
object
- string: object name (only if rotating object matrix) {default: None}
PYMOL API
cmd.translate(list vector, string selection = "all", int state = 0,
int camera = 1, string object = None)
EXAMPLES
Example 1
A simple example; just move the alpha-carbons one Ang. along the X-axis.
# move the alpha carbons one Ang. on the X-axis
translate [1,0,0], name ca
Example 2
A slightly more complicated example. Load two proteins, align them, and then move one away from the other to see their similarities separately.
# load 1cll and 1ggz
fetch 1cll 1ggz, async=0
# align the two proteins
cealign 1cll, 1ggz
# orient the proteins
orient
# move 1cll above 1ggz so we can
# see both proteins separately
translate [0, 40, 0], 1cll
NOTES
- if state = 0, then only visible state(s) are affected.
- if state = -1, then all states are affected.