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| [https://pymol.org PyMOL v2.0 has been released] on September 20, 2017.
 
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Revision as of 18:20, 20 September 2017

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.0 has been released on September 20, 2017.
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
Official Release PyMOL v1.8.6 has been released on March 9, 2017.
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Ribbon color

==Overview==

Ribbon_color allows one to explicitly state the color to be applied to a ribbon object.

Syntax

# set it to a color
set ribbon_color, color

# examples:
# default auto-cycles the color for each new object
set ribbon_color, marine

# apply green to the ribbon only for object obj01
set ribbon_color, green /obj01

# apply orange to the ribbon only for chain B of object obj01; NB: not fully enabled until version 1.0
set ribbon_color, orange /obj01//B

Examples


Advanced details

Some notes on general Set syntax (From PyMOL "help set"):

DESCRIPTION

  "set" changes one of the PyMOL state variables,

USAGE

  set name, [,value [,object-or-selection [,state ]]]

  set name = value  # (DEPRECATED)

PYMOL API

  cmd.set ( string name, string value=1,
            string  ..→
A Random PyMOL-generated Cover. See Covers.