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Difference between revisions of "Cartoon cylindrical helices"
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| − | + | The [[cartoon_cylindrical_helices]] setting makes [[cartoon]] helices appear as simple cylinders. | |
| + | |||
| + | ''Changed in PyMOL 2.5: Cylinders are not straight anymore but follow the actual curved shape of a helix. Straight helices are still available as mode 2.'' | ||
| + | |||
| + | == Modes == | ||
| + | |||
| + | * 0: Off (helices will be rendered according to the [[cartoon]] property or settings like [[cartoon_fancy_helices]]) | ||
| + | * 1: Curved helices (since PyMOL 2.5) | ||
| + | * 2: Straight helices | ||
| + | |||
| + | == Example == | ||
| + | |||
| + | fetch 1bb1 | ||
| + | set cartoon_cylindrical_helices, 1 | ||
| + | as cartoon | ||
| + | |||
| + | {|class="wikitable" | ||
| + | ! set cartoon_cylindrical_helices, 1 | ||
| + | ! set cartoon_cylindrical_helices, 2 | ||
| + | |- | ||
| + | | [[File:cartoon_cylindrical_helices-1.png]] | ||
| + | | [[File:cartoon_cylindrical_helices-2.png]] | ||
| + | |} | ||
| + | |||
| + | == Related Settings == | ||
| + | |||
| + | * [[cartoon_smooth_cylinder_window]]: half-window size for window average smoothing (mode 1) | ||
| + | * [[cartoon_smooth_cylinder_cycles]]: number of cycles for window average smoothing (mode 1) | ||
| + | * [[cartoon_loop_quality]] affects "roundness" of mode 1 curved cylindrical helices (and loops of course). | ||
| + | |||
| + | == See Also == | ||
| + | |||
| + | * [[Cartoon Helix Settings]] | ||
| + | * [[cartoon_smooth_loops]] | ||
| + | |||
| + | [[Category:Settings]] | ||
Latest revision as of 04:05, 7 December 2020
The cartoon_cylindrical_helices setting makes cartoon helices appear as simple cylinders.
Changed in PyMOL 2.5: Cylinders are not straight anymore but follow the actual curved shape of a helix. Straight helices are still available as mode 2.
Modes
- 0: Off (helices will be rendered according to the cartoon property or settings like cartoon_fancy_helices)
- 1: Curved helices (since PyMOL 2.5)
- 2: Straight helices
Example
fetch 1bb1 set cartoon_cylindrical_helices, 1 as cartoon
| set cartoon_cylindrical_helices, 1 | set cartoon_cylindrical_helices, 2 |
|---|---|
| File:Cartoon cylindrical helices-1.png | File:Cartoon cylindrical helices-2.png |
Related Settings
- cartoon_smooth_cylinder_window: half-window size for window average smoothing (mode 1)
- cartoon_smooth_cylinder_cycles: number of cycles for window average smoothing (mode 1)
- cartoon_loop_quality affects "roundness" of mode 1 curved cylindrical helices (and loops of course).