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m (moved Intra Rms to Intra rms: small letters)
(user comments had been removed for its irrelevance. They are copied to rms page given its importance and add a link to the page.)
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rms = cmd.intra_rms("(name ca)",1)
 
rms = cmd.intra_rms("(name ca)",1)
 
</source>
 
</source>
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===USER COMMENTS===
 +
See [[Rms]] for selection caveats for this group of commands.
  
 
===SEE ALSO===
 
===SEE ALSO===

Revision as of 09:52, 20 November 2013

intra_rms calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array.

PYMOL API

cmd.intra_rms( string selection, int state)

PYTHON EXAMPLE

from pymol import cmd
rms = cmd.intra_rms("(name ca)",1)

USER COMMENTS

See Rms for selection caveats for this group of commands.

SEE ALSO

Fit, Rms, Rms_Cur, Intra_Fit, Intra_Rms_Cur, Pair_Fit