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{| class="jtable" style="float: left; width: 90%;"
 
{| class="jtable" style="float: left; width: 90%;"
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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|-
 
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! Selection keywords
 
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| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
 
|-
 
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! Official Release
 
! Official Release
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| [https://pymol.org PyMOL v2.0 has been released] on September 20, 2017.
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
 
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|-
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! Plugin Update
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! Python 3
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
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|-
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! Official Release
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! POSF
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| [http://pymol.org PyMOL v1.8.6 has been released] on March 9, 2017.
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
 
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|-
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! Official Release
+
! Tutorial
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| [http://pymol.org PyMOL v1.8.4 has been released] on October 4, 2016.
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| [[Plugins Tutorial]] updated for PyQt5
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|-
 
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! New Script
 
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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
 
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|-
 
! New Plugin
 
! New Plugin
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| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
|-
 
|-
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! Official Release
+
! Selection keywords
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| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
+
| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
|-
 
|-
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! PyMOL Open-Source Fellowship
+
! Plugin Update
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| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
+
| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 
|-
 
|-
−
! Official Release
+
! New Script
−
| [http://pymol.org PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released] on May 4, 2015.
+
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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|-
 
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! New Plugin
 
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| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
 
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|-
 
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! New Plugin
 
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| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
 
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|-
 
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! New Plugin
 
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
 
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|-
 
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! 3D using Geforce
 
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| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 
 
|-
 
|-
 
! Older News
 
! Older News

Latest revision as of 03:21, 22 June 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Cartoon Helix Settings

==Overview==

This setting sets the style in which cartoon helices are rendered. The default is a helix with an ellipsoid cross section. Fancy mode helices are ribbons with tubular edges à la MolScript. Cylindicial mode renders helices as solid cylinders.

Syntax

To turn on Fancy Helices: 

set cartoon_fancy_helices, 1

To turn on Cylindrical Helices: 

set cartoon_cylindrical_helices, 1

To return to default helices: 

set cartoon_fancy_helices, 0
set cartoon_cylindrical_helices, 0

Result

  • Fancy helix

  • Cylindrical helix

  • Default representation

Change size of default cartoon helix

To change the size of the cartoon helices when not in the fancy helix mode you change the dimensions of the oval that represents the cross section of the default cartoon representation.

Cartoon oval length.png 

set cartoon_oval_length , 0.8 # default is 1.20

and <source lang="python"> set cartoon_oval_width , ..→

A Random PyMOL-generated Cover. See Covers.


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