VisLoad - Revision history

Pyadmin: 5 revisions

2014-03-28T01:44:41Z

5 revisions

New page

{{Infobox script-repo
|type = Python Module
|filename =
|author = [[User:Inchoate|Jason Vertrees]]
|license = [http://www.opensource.org/licenses/BSD-2-Clause BSD]
}}

[[visLoad]] will load an object and show it in your desired representation. PyMOL by default loads things as lines (or spheres, a setting you may change), but not others.

= Usage =
* Save the code to "visLoad.py".
* Run the code from PyMOL or put it in your .pymolrc
* Use visLoad whenever you would use load
* To change representations, update "cartoon" to something else, or add more intermediate commands.

= The Code =
<source lang="python">
import os
from os import path
from pymol import cmd

def visLoad(filename, object=None, *args, **kwargs):
if object==None:
object = os.path.basename(filename).split(".")[0]
cmd.set("suspend_updates")
try:
cmd.load(filename, object, *args, **kwargs)
cmd.show_as("cartoon", object)
finally:
cmd.set("suspend_updates", "off")

cmd.extend("visLoad", visLoad)
</source>

= See Also =
[[Load]], [[Save]], [[Show_as]]

Settings: [[auto_show_lines]], [[auto_show_nonbonded]], [[auto_show_spheres]]

[[Category:Script_Library]]
[[Category:UI_Scripts]]

Speleo3: see also settings

2011-10-23T09:46:51Z

Newacct at 08:18, 19 May 2011

2011-05-19T08:18:30Z

New page

[[visLoad]] will load an object and show it in your desired representation. PyMOL by default loads things as lines (or spheres, a setting you may change), but not others.

= Usage =
* Save the code to "visLoad.py".
* Run the code from PyMOL or put it in your .pymolrc
* Use visLoad whenever you would use load
* To change representations, update "cartoon" to something else, or add more intermediate commands.

= The Code =
<source lang="python">
import os
from os import path

def visLoad(filename, object=None, *args, **kwargs):
if object==None:
object = os.path.basename(filename).split(".")[0]
cmd.set("suspend_updates")
try:
cmd.load(filename, object, *args, **kwargs)
cmd.show_as("cartoon", object)
finally:
cmd.set("suspend_updates", "off")

cmd.extend("visLoad", visLoad)
</source>

= See Also =
[[Load]], [[Save]], [[Show_as]]

[[Category:Script_Library]]
[[Category:UI_Scripts]]

@@ Line 11: / Line 11: @@
 import os
 from os import path
 def visLoad(filename, object=None, *args, **kwargs):
@@ Line 27: / Line 28: @@
 = See Also =
 [[Load]], [[Save]], [[Show_as]]
 [[Category:Script_Library]]
 [[Category:UI_Scripts]]