User talk:Philaltist - Revision history

Bell: 13 revisions

2014-03-28T04:13:34Z

13 revisions

2006-06-02T18:02:37Z

2006-06-02T17:21:28Z

2005-04-04T20:51:43Z

2005-04-04T20:50:37Z

2005-03-09T17:18:45Z

2005-03-09T17:16:28Z

2005-03-07T19:26:10Z

2005-03-06T04:33:32Z

2005-03-06T04:30:15Z

← Older revision		Revision as of 18:02, 2 June 2006
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	Do you think that a singe page for all the cartoon_helix types would be better than separate pages? e.g. putting the fance, normal, and cylindrical all on one page --Adam Shea		Do you think that a singe page for all the cartoon_helix types would be better than separate pages? e.g. putting the fance, normal, and cylindrical all on one page --Adam Shea
		+
		+	Yes I think it would be best to have all the cartoon_helix links of the settings page point to the same page. Do you know how to do that ? I think it would be less hairy/redundant than a 'related settings' section in multiple pages. --Philippe Garteiser

← Older revision	Revision as of 17:21, 2 June 2006
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−	+	Do you think that a singe page for all the cartoon_helix types would be better than separate pages? e.g. putting the fance, normal, and cylindrical all on one page --Adam Shea

← Older revision		Revision as of 20:50, 4 April 2005
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	Thank you for any feedback, ways of improving it,...		Thank you for any feedback, ways of improving it,...
−
−	~~[[Category:Scripting_Script_Library]]~~

← Older revision		Revision as of 17:18, 9 March 2005
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	Thank you for any feedback, ways of improving it,...		Thank you for any feedback, ways of improving it,...

−	[[Category:Scripting_Script_Library~~\|pdbsurvey~~]]	+	[[Category:Scripting_Script_Library]]

← Older revision		Revision as of 17:16, 9 March 2005
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	Thank you for any feedback, ways of improving it,...		Thank you for any feedback, ways of improving it,...
		+
		+	[[Category:Scripting_Script_Library\|pdbsurvey]]

← Older revision	Revision as of 04:13, 28 March 2014
(No difference)

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 I have created a script because I was tired of browsing the pdb for endless searches of structures relevant to my field. This scripts takes as input a text file in which you copied your favourite keywords, and the number of days you want to search back (by default, it will look at the structures added the last 50 days). It generates a report text file that contains the pdb id and name of the relevant structures that have been recently added. All you need to do is add 'run pdbsurvey.py' to your startup file, and create a text file called 'keywords.txt' with your keywords separated by an end-of-line character. Then you're ready to go. Just hit 'pdbsurvey' from within your PyMol instance, and the program returns the report file. The pdb ftp server is updated every tuesday.
 <source lang="python">
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 </source>
-Philaltist,
+Thank you for any feedback, ways of improving it,...

← Older revision		Revision as of 04:33, 6 March 2005
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	cmd.extend("pdbsurvey",pdbsurvey)		cmd.extend("pdbsurvey",pdbsurvey)
	</source>		</source>
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		+	Philaltist,
		+
		+	To make scripts available to folks, the simplest method is to upload the script as you did and then just wrap the script in <python> and </python> code. Look at what I did to your code for an example. If you want line numbers in your code, use "npython" instead of "python".
		+
		+	-- tree

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 P.S. Here's the script in raw text format :
 from pymol import cmd
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 cmd.extend("pdbsurvey",pdbsurvey)