https://wiki.pymol.org/index.php?action=history&feed=atom&title=TransparencyTransparency - Revision history2026-05-10T05:37:54ZRevision history for this page on the wikiMediaWiki 1.35.1https://wiki.pymol.org/index.php?title=Transparency&diff=10588&oldid=prevBell: 7 revisions2014-03-28T04:07:10Z<p>7 revisions</p>
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</td></tr></table>Bellhttps://wiki.pymol.org/index.php?title=Transparency&diff=10587&oldid=prevSpeleo3: slices2012-04-10T14:30:36Z<p>slices</p>
<p><b>New page</b></p><div>== Overview ==<br />
'''Transparency''' is used to adjust the transparency of '''[[Surface]]s''' and '''[[Slice]]s'''. (For other transparencies in PyMOL, see [[cartoon_transparency |Cartoon Transparency]], [[sphere_transparency|Sphere Transparency]], and [[stick_transparency|Stick Transparency]].<br />
<br />
==Usage==<br />
<source lang="python"><br />
set transparency, F, selection<br />
</source><br />
where '''F''' is a floating point number in the range ''[0.0 - 1.0]'', where '''selection''' is the selected surface to apply the change to (for examples, see below). <br />
<br />
For the value of ''F'', 1.0 will be an invisible and 0.0 a completely solid surface.<br />
<br />
<br />
==Examples==<br />
===Whole Surface===<br />
Change the transparency of the whole surface to 50%.<br />
<source lang="python"><br />
# show all surfaces with 50% transparency.<br />
set transparency, 0.5<br />
</source><br />
<br />
<br />
<gallery><br />
Image: Surf065.png | Image showing partial surface transparencies<br />
Image: Surfall_065.png | Image showing 100% of the surface with 65% transparency.<br />
</gallery><br />
<br />
===Selected Surface Elements===<br />
Simple example showing how to do partial surface transparency. This allows different selections to have different transparencies on the same object (or also on different objects).<br />
<br />
<source lang="python"><br />
# load a random protein<br />
fetch 1rty<br />
<br />
# set the partial transparency for the selected residues<br />
set transparency, 0.65, i. 1-100<br />
</source><br />
<br />
<gallery widths="300px" heights="200px"><br />
Image:Diffy_transp.png|Different transparency settings on different objects.<br />
Image:Diffy_transp2.png|Different transparency settings on the same object.<br />
</gallery><br />
<br />
<br />
<br />
<br />
<br />
[[Category:Settings|Transparency]]<br />
[[Category:Publication_Quality|Transparency]]</div>Speleo3https://wiki.pymol.org/index.php?title=Transparency&diff=10581&oldid=prevVossman: new page, needs help2006-06-27T19:54:59Z<p>new page, needs help</p>
<p><b>New page</b></p><div>'''Transparency''' is used to adjust the transparency of surfaces. To use try:<br />
<br />
set transparency, 0.5<br />
<br />
or<br />
<br />
set transparency=0.5, selection<br />
<br />
Where 1.0 will be an invisible and 0.0 a completely solid surface.</div>Vossman