https://wiki.pymol.org/index.php?action=history&feed=atom&title=Talk%3ANormalize_ccp4_maps 2026-07-06T23:37:34Z Revision history for this page on the wiki MediaWiki 1.35.1 https://wiki.pymol.org/index.php?title=Talk:Normalize_ccp4_maps&diff=12742&oldid=prev 2015-07-09T20:24:04Z

<p>2 revisions</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:24, 9 July 2015</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Bell https://wiki.pymol.org/index.php?title=Talk:Normalize_ccp4_maps&diff=12741&oldid=prev 2015-06-05T17:36:57Z

<p></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:36, 5 June 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=COOT&amp;D=0#3</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=COOT&amp;D=0#3</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=ccp4bb&amp;D=0#16</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=ccp4bb&amp;D=0#16</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== PyMOL normalizes across the data grid in the ccp4 file, not across the unit cell. Better options might be: ==</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* normalize across the unit cell</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* not to normalize at all (change the default of '''normalize_ccp4_maps''' to '''off''')</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* normalize based on AMEAN and ARMS reported in the ccp4 map header</ins></div></td></tr> </table>

Speleo3 https://wiki.pymol.org/index.php?title=Talk:Normalize_ccp4_maps&diff=12740&oldid=prev 2015-06-05T17:29:58Z

<p>Created page with &quot;== Discussions about isolevel discrepancy between PyMOL and Coot == * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=COOT&amp;D=0#3 * https://www.jiscmail.ac.uk/cgi-bin/we...&quot;</p> <p><b>New page</b></p><div>== Discussions about isolevel discrepancy between PyMOL and Coot ==<br /> <br /> * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=COOT&amp;D=0#3<br /> * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&amp;L=ccp4bb&amp;D=0#16</div>

Speleo3