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2014-03-28T00:44:06Z

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Tlinnet: Created page with "=== Example 1 === Taken from User:Mglerner#APBS_Plugin_FAQ Does not seem to work? reinitialize fetch 1rx1, async=0 fetch 1rx2, async=0 set..."

2011-12-06T23:33:57Z

Created page with "=== Example 1 === Taken from User:Mglerner#APBS_Plugin_FAQ Does not seem to work? <syntaxhighlight lang="python"> reinitialize fetch 1rx1, async=0 fetch 1rx2, async=0 set..."

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=== Example 1 ===
Taken from [[User:Mglerner#APBS_Plugin_FAQ]]

Does not seem to work?

<syntaxhighlight lang="python">
reinitialize
fetch 1rx1, async=0
fetch 1rx2, async=0

set grid_mode,1
align 1rx1, 1rx2

show_as cartoon, 1rx1 or 1rx2

## Run APBS on protein #1, 1rx1
### Plugin > APBS Tools2 > ... Under "selection to use" type "(polymer) and 1rx1"
### Rename the map set_name pymol-generated, 1rx1_map. -> "Run Grid" -> "Run APBS"
## Run APBS on protein #2, 1rx2;
### Plugin > APBS Tools2 > ... Under "selection to use" type "(polymer) and 1rx2"
### Rename the map set_name pymol-generated, 1rx2_map. -> "Run Grid" -> "Run APBS"
## Use APBS to show the surfaces make sure you choose 1rx1_map for 1rx1 and 1rx2_map for 1rx2
### Click "Update" if those map names are not present. ...

### Assign grid slots just to be sure the right maps and proteins are in the right places
#set grid_slot, 1, 1rx1
#set grid_slot, 1, 1rx1_map
#set grid_slot, 1, e_lvl_0_1
#set grid_slot, 2, 1rx2
#set grid_slot, 2, 1rx2_map
#set grid_slot, 2, e_lvl_1_1
</syntaxhighlight>

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Pyadmin: 1 revision

Tlinnet: Created page with "=== Example 1 === Taken from User:Mglerner#APBS_Plugin_FAQ Does not seem to work? reinitialize fetch 1rx1, async=0 fetch 1rx2, async=0 set..."