Sticks - Revision history

Pyadmin: 11 revisions

2014-03-28T01:44:19Z

11 revisions

New page

= Overview =
A simple PyMol representation where bonds are drawn as sticks. Use
<source lang="python">
# using the show command, for some SELECTION
show sticks, SELECTION

# using the as command
as sticks, SELECTION
</source>
where SELECTION is a valid selection or previously defined selection name.

<gallery>
Image:Sticks_ex.png|Example Sticks Representation
</gallery>

==Settings==
*[[stick_ball]]
*[[stick_nub]]
*[[stick_transparency]]
*[[stick_ball_ratio]]
*[[stick_overlap]]
*[[stick_valence_scale]]
*[[stick_color]]
*[[stick_quality]]
*[[stick_fixed_radius]]
*[[stick_radius]]
*[[set_bond]]

===Example Settings===
=== Color Sticks===
Use [[set_bond]] to set stick-bond settings, like color:
<source lang="python">
set_bond 1foo and i. XYZ, color red
</source>

==== Sticks Radius (Sticks Weight)====
To change the radius for sticks, enter the following:
<source lang="python">
set stick_radius, VALUE
</source>
where
0.0<=VALUE<=1.0

*'''1.0''' is 100% or full radius
*'''0.0''' is 0% or invisible -- so use at least 0.1 or greater
*The default value is: ~0.3

====Sticks Transparency====
To enable transparency for sticks, enter the following:
<source lang="python">
set stick_transparency, VALUE
</source>
where ''0.0<=VALUE<=1.0''

*'''1.0''' is 100% transparent -- so invisible
*'''0.0''' is 0% transparent -- so opaque

<source lang="python">
set stick_transparency, 0.45
</source>

[[Category:Representations|Sticks]]
[[Category:Sticks]]

Jnowacki: /* Sticks Radius (Sticks Weight) */

2007-04-06T17:04:31Z

Sticks Radius (Sticks Weight)

New page

A simple PyMol representation. Use
<code>
show sticks, SELECTION
</code>
where SELECTION is a valid selection or previously defined selection name.

[[Image:Sticks_ex.png|thumb|center|Example Sticks Representation]]

== Sticks Radius (Sticks Weight)==
To change the radius for sticks, enter the following:
set stick_radius, VALUE
where
0.0<=VALUE<=1.0

'''1.0''' is 100% or full radius

'''0.0''' is 0% or invisible -- so use at least 0.1 or greater

*The default value is: ~0.3

==Sticks Transparency==
To enable transparency for sticks, enter the following:
set stick_transparency, VALUE
where
0.0<=VALUE<=1.0

'''1.0''' is 100% transparent -- so invisible

'''0.0''' is 0% transparent -- so opaque

Example
set stick_transparency, 0.45

[[Category:Representations|Sticks]]

Hsteinbe at 16:23, 2 August 2005

2005-08-02T16:23:53Z

New page

A simple PyMol representation. Use
<code>
show sticks, SELECTION
</code>
where SELECTION is a valid selection or previously defined selection name.

== Sticks Radius (Sticks Weight)==
To change the radius for sticks, enter the following:
set stick_radius, VALUE
where
0.0<=VALUE<=1.0

'''1.0''' is 100% or full radius

'''0.0''' is 0% or invisible -- so use at least 0.1 or greater

==Sticks Transparency==
To enable transparency for sticks, enter the following:
set stick_transparency, VALUE
where
0.0<=VALUE<=1.0

'''1.0''' is 100% transparent -- so invisible

'''0.0''' is 0% transparent -- so opaque

Example
set stick_transparency, 0.45

[[Image:Sticks_ex.png|thumb|Example Sticks Representation]]

[[Category:Representations|Sticks]]