https://wiki.pymol.org/index.php?action=history&feed=atom&title=Sst 2026-04-27T04:39:39Z Revision history for this page on the wiki MediaWiki 1.35.1 https://wiki.pymol.org/index.php?title=Sst&diff=14134&oldid=prev 2017-11-13T03:27:05Z

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Cchem https://wiki.pymol.org/index.php?title=Sst&diff=14133&oldid=prev 2017-10-29T18:54:12Z

<p>created</p> <p><b>New page</b></p><div>{{Infobox psico<br /> |module = psico.editing<br /> }}<br /> <br /> [[sst]] is a wrapper for the [http://lcb.infotech.monash.edu.au/sstweb2/ SST secondary structural assignment web service]. The command updates PyMOL's '''ss''' atom property.<br /> <br /> SST does minimum message length inference of secondary structure based on C-alpha atom positions.<br /> <br /> == Usage ==<br /> <br /> sst [ selection [, raw [, state ]]]<br /> <br /> == Arguments ==<br /> <br /> * '''selection''' = str: atom selection {default: all}<br /> * '''raw''' = str: [[iterate#Exposed_Variables|atom property]] to assign the sst secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the '''ss''' property {default: }<br /> * '''state''' = int: object state {default: -1 (current state)}<br /> <br /> == Example ==<br /> <br /> import psico.editing<br /> fetch 1ubq, async=0<br /> <br /> sst all, raw=custom<br /> as cartoon<br /> <br /> color gray<br /> spectrum custom, selection=guide<br /> set cartoon_discrete_colors, 1<br /> label guide, custom<br /> <br /> == See Also ==<br /> <br /> * [[dssp]]<br /> * [[dss]]<br /> <br /> [[Category:Script Library]]<br /> [[Category:Structural_Biology_Scripts]]</div>

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