Split states - Revision history

Bell: 13 revisions

2014-03-28T03:36:12Z

13 revisions

Hongbo zhu at 14:26, 21 September 2012

2012-09-21T14:26:05Z

Speleo3: moved Split States to Split states: lower case

2011-12-20T14:24:15Z

moved Split States to Split states: lower case

Gregori: Small typo

2010-01-07T08:21:29Z

Small typo

New page

'''Split_States''' splits and orients multiple models and multimers from the biological unit file into a set of single-state molecular objects.

== Syntax ==
<source lang="python">
split_states object [, first [, last [, prefix ]]]
</source>

This splits the '''object''' from '''first''' to '''last''' out to the array of objects prefixed by '''prefix'''. The '''prefix''' option is very handy if all your states--or a subset of the states--have the same name.

==Using==
To use '''split_states''' simply
Load your molecule
<source lang="python">
# example usage
load fileName.pdb1, name
split_states name
delete name

# split all the states to objects starting with conf
fetch 1nmr
split_states 1nmr, prefix=conf
</source>

==Example==
'''1VLS''': A dimer.
<source lang="python">
load 1vls.pdb1, 1vls
split_states 1vls
dele 1vls
</source>

<gallery>
Image:1vls1.png|1VLS as a monomer. This is the state of 1VLS when I load the molecule (and select cartoon representation).
Image:1vls1_dimer.png|1VLS as a dimer using the split_states command. Notice PyMOL automatically loads and orients the new molecules.
</gallery>

[[Category:Commands|Split States]]
[[Category:States|Split States]]

Vinnyrose at 14:27, 20 June 2009

2009-06-20T14:27:32Z

New page

=Overview=
'''Split_States''' splits and orients multiple models and multimers from the biological unit file into a set of single-state molecular objects.

== Syntax ==
<source lang="python">
split_states object [, first [, last [, prefix ]]]
</source>

This splits the '''object''' from '''first''' to '''last''' out to the array of objects prefixed by '''prefix'''. The '''prefix''' option is very handy is all your states--or a subset of the states--have the same name.

==Using==
To use '''split_states''' simply
Load your molecule
<source lang="python">
# example usage
load fileName.pdb1, name
split_states name
delete name

# split all the states to objects starting with conf
fetch 1nmr
split_states 1nmr, prefix=conf
</source>

==Example==
'''1VLS''': A dimer.
<source lang="python">
load 1vls.pdb1, 1vls
split_states 1vls
dele 1vls
</source>

<gallery>
Image:1vls1.png|1VLS as a monomer. This is the state of 1VLS when I load the molecule (and select cartoon representation).
Image:1vls1_dimer.png|1VLS as a dimer using the split_states command. Notice PyMOL automatically loads and orients the new molecules.
</gallery>

[[Category:Commands|Split States]]
[[Category:States|Split States]]

Gilleain at 11:31, 3 August 2005

2005-08-03T11:31:00Z

New page

=Overview=
'''Split_States''' splits and orients multiple models and multimers from the biological unit file.

==Using==
To use '''split_states''' simply
Load your molecule
<source lang="python">
load fileName.pdb1, name
split_states name
delete name
</source>

==Example==
'''1VLS''': A dimer.
<source lang="python">
load 1vls.pdb1, 1vls
split_states 1vls
dele 1vls
</source>
[[Image:1vls1.png|thumb|left|1VLS as a monomer. This is the state of 1VLS when I load the molecule (and select cartoon representation).]]
[[Image:1vls1_dimer.png|left|thumb|1VLS as a dimer using the split_states command.]]

← Older revision	Revision as of 03:36, 28 March 2014
(No difference)

@@ Line 34: / Line 34: @@
 Image:1vls1_dimer.png|1VLS as a dimer using the split_states command.  Notice PyMOL automatically loads and orients the new molecules.
 </gallery>
 [[Category:Commands|Split States]]
 [[Category:States|Split States]]

← Older revision	Revision as of 14:24, 20 December 2011
(No difference)