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Bell: 1 revision

2014-05-20T23:57:30Z

1 revision

OsvaldoMartin: /* SEE ALSO */

2014-05-20T21:11:34Z

Bell: 14 revisions

2014-03-28T03:36:06Z

14 revisions

Hongbo zhu: /* Example */ add hide nonpolar hydro. Derived by logging menu item (H->hydrogens->nonpolar)

2012-10-11T12:06:03Z

Example: add hide nonpolar hydro. Derived by logging menu item (H->hydrogens->nonpolar)

New page

'''Show''' displays atom and bond representations for certain selections.

=Details=
<gallery widths="125px" heights="125px" align="right">
Image:Ray2.png|Example of a shown surface.
Image:Ray_trace_gain2.png|Ball and sticks shown.
Image:Mesh_w05.png|A cartoon inside a mesh shown.
</gallery>

The '''Show''' command, is one of the most often used commands in PyMOL. For example, you can ''show'' certain atoms as ''[[Lines]]'' or ''[[Sticks]]'' or ''[[Cartoon]]s'' or any of the following representations:
*[[lines]]
*[[spheres]]
*[[mesh]]
*[[ribbon]]
*[[cartoon]]
*[[sticks]]
*[[dots]]
*[[surface]]
*[[Label|label]]
*[[extent]]
*[[nonbonded]]
*[[nb_spheres]]
*[[slice]]
*[[cell]]

==USAGE==
show
show reprentation [,object]
show reprentation [,(selection)]
show (selection)

==PYMOL API==
<source lang="python">
cmd.show( string representation="", string selection="" )
</source>

==EXAMPLES==
====Example====
<source lang="python">
# show the backbone using lines.
show lines,(name ca or name c or name n)
</source>

====Example====
<source lang="python">
# show the ribbon representation for all objects
show ribbon
</source>

====Example====
<source lang="python">
# show all hetero atoms as spheres
show spheres, het
</source>

====Example====
<source lang="python">
# show only polar hydrogens
hide everything, ele h
show lines, ele h and neighbor (ele n+o)
# hide nonpolar hydrogens
hide (h. and (e. c extend 1))
</source>

==NOTES==
'''selection''' can be an object name.

'''show''' alone will turn on lines and nonbonded for all bonds.

'''show cell''' will show the triclinic unit cell, provided it's described in the PDB. For cell packing, you need a script. See [[:Category:Script_Library|The Script Library]] or [http://adelie.biochem.queensu.ca/~rlc/work/pymol/ Robert Campbell's Site]

==SEE ALSO==
[[Hide]], [[Enable]], [[Disable]], [[Lines]], [[Cartoon]], [[Spheres]], [[Mesh]], [[Ribbon]], [[Sticks]], [[Dots]], [[Surface]], [[Label]], [[Extent]], [[Slice]], [[Cell]], [[Select]], [[Show_as]]

[[Category:Commands|Show]]
[[Category:View Module|Show]]

Vinnyrose at 15:07, 20 June 2009

2009-06-20T15:07:52Z

New page

<gallery widths="125px" heights="125px" align="right">
Image:Ray2.png|Example of a shown surface.
Image:Ray_trace_gain2.png|Ball and sticks shown.
Image:Mesh_w05.png|A cartoon inside a mesh shown.
</gallery>

==DESCRIPTION==
'''Show''' displays atom and bond representations for certain selections. The '''Show''' command, is one of the most often used commands in PyMOL. For example, you can ''show'' certain atoms as ''[[Lines]]'' or ''[[Sticks]]'' or ''[[Cartoon]]s'' or any of the following representations:
*[[lines]]
*[[spheres]]
*[[mesh]]
*[[ribbon]]
*[[cartoon]]
*[[sticks]]
*[[dots]]
*[[surface]]
*[[Label|label]]
*[[extent]]
*[[nonbonded]]
*[[nb_spheres]]
*[[slice]]
*[[cell]]

==USAGE==
show
show reprentation [,object]
show reprentation [,(selection)]
show (selection)

==PYMOL API==
<source lang="python">
cmd.show( string representation="", string selection="" )
</source>

==EXAMPLES==
====Example====
<source lang="python">
# show the backbone using lines.
show lines,(name ca or name c or name n)
</source>

====Example====
<source lang="python">
# show the ribbon representation for all objects
show ribbon
</source>

====Example====
<source lang="python">
# show all hetero atoms as spheres
show spheres, het
</source>

====Example====
<source lang="python">
# show only polar hydrogens
hide everything, ele h
show lines, ele h and neighbor (ele n+o)
</source>

==NOTES==
'''selection''' can be an object name.

'''show''' alone will turn on lines and nonbonded for all bonds.

'''show cell''' will show the triclinic unit cell, provided it's described in the PDB. For cell packing, you need a script. See [[:Category:Script_Library|The Script Library]] or [http://adelie.biochem.queensu.ca/~rlc/work/pymol/ Robert Campbell's Site]

==SEE ALSO==
[[Hide]], [[Enable]], [[Disable]], [[Lines]], [[Cartoon]], [[Spheres]], [[Mesh]], [[Ribbon]], [[Sticks]], [[Dots]], [[Surface]], [[Label]], [[Extent]], [[Slice]], [[Cell]], [[Select]], [[Show_as]]

[[Category:Commands|Show]]
[[Category:View Module|Show]]

Tommysander at 11:59, 20 July 2007

2007-07-20T11:59:53Z

New page

==DESCRIPTION==
'''Show''' displays atom and bond representations for certain selections. The '''Show''' command, is one of the most often used commands in PyMOL. For example, you can ''show'' certain atoms as ''[[Lines]]'' or ''[[Sticks]]'' or ''[[Cartoon]]s'' or any of the following representations:
*[[lines]]
*[[spheres]]
*[[mesh]]
*[[ribbon]]
*[[cartoon]]
*[[sticks]]
*[[dots]]
*[[surface]]
*[[Label|label]]
*[[extent]]
*[[nonbonded]]
*[[nb_spheres]]
*[[slice]]
*[[cell]]

==USAGE==
show
show reprentation [,object]
show reprentation [,(selection)]
show (selection)

==PYMOL API==
<source lang="python">
cmd.show( string representation="", string selection="" )
</source>

==EXAMPLES==
====Example====
<source lang="python">
# show the backbone using lines.
show lines,(name ca or name c or name n)
</source>

====Example====
<source lang="python">
# show the ribbon representation for all objects
show ribbon
</source>

====Example====
<source lang="python">
# show all hetero atoms as spheres
show spheres, het
</source>

====Example====
<source lang="python">
# show only polar hydrogens
hide everything, ele h
show lines, ele h and neighbor (ele n+o)
</source>

==NOTES==
'''selection''' can be an object name.

'''show''' alone will turn on lines and nonbonded for all bonds.

'''show cell''' will show the triclinic unit cell, provided it's described in the PDB. For cell packing, you need a script. See [[:Category:Script_Library|The Script Library]] or [http://adelie.biochem.queensu.ca/~rlc/work/pymol/ Robert Campbell's Site]

==SEE ALSO==
[[Hide]], [[Enable]], [[Disable]], [[Lines]], [[Cartoon]], [[Spheres]], [[Mesh]], [[Ribbon]], [[Sticks]], [[Dots]], [[Surface]], [[Label]], [[Extent]], [[Slice]], [[Cell]], [[Select]]

← Older revision	Revision as of 23:57, 20 May 2014
(No difference)

@@ Line 71: / Line 71: @@
 ==SEE ALSO==
-[[Hide]], [[Enable]], [[Disable]], [[Lines]], [[Cartoon]], [[Spheres]], [[Mesh]], [[Ribbon]], [[Sticks]], [[Dots]], [[Surface]], [[Label]], [[Extent]], [[Slice]], [[Cell]], [[Select]], [[Show_as]]
+[[Hide]], [[Enable]], [[Disable]], [[Suspend_updates]], [[Lines]], [[Cartoon]], [[Spheres]], [[Mesh]], [[Ribbon]], [[Sticks]], [[Dots]], [[Surface]], [[Label]], [[Extent]], [[Slice]], [[Cell]], [[Select]], [[Show_as]]
 [[Category:Commands|Show]]
 [[Category:View Module|Show]]

← Older revision	Revision as of 03:36, 28 March 2014
(No difference)