https://wiki.pymol.org/index.php?action=history&feed=atom&title=Settings 2026-04-27T10:44:17Z Revision history for this page on the wiki MediaWiki 1.35.1 https://wiki.pymol.org/index.php?title=Settings&diff=11963&oldid=prev 2014-06-09T14:21:57Z

<p>1 revision</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:21, 9 June 2014</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Bell https://wiki.pymol.org/index.php?title=Settings&diff=11962&oldid=prev 2014-06-06T10:53:58Z

<p>linked valence_size and valence_mode to valence page</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:53, 6 June 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l650" >Line 650:</td> <td colspan="2" class="diff-lineno">Line 650:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence_default]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence_default]]</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[<del class="diffchange diffchange-inline">valence_size</del>]]</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[<ins class="diffchange diffchange-inline">valence|valence_mode</ins>]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[validate_object_names]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[validate_object_names]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[valence|valence_size]]</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[virtual_trackball]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[virtual_trackball]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> </table>

Andwar https://wiki.pymol.org/index.php?title=Settings&diff=10156&oldid=prev 2014-03-28T03:53:28Z

<p>92 revisions</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 03:53, 28 March 2014</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Bell https://wiki.pymol.org/index.php?title=Settings&diff=10155&oldid=prev 2014-01-05T19:26:35Z

<p>added alphabetic index for easier browsing</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 19:26, 5 January 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>PyMOL is incredibly useful because of its flexibility.  Almost any setting can be tweaked to give you the ability to make your scenes appear just as you want.  Each command usually comes with one or more settings.  For example, the [[ray]] command comes with '''50''' settings!</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>PyMOL is incredibly useful because of its flexibility.  Almost any setting can be tweaked to give you the ability to make your scenes appear just as you want.  Each command usually comes with one or more settings.  For example, the [[ray]] command comes with '''50''' settings!</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==List of settings==</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Below you will find the list of all known settings (as of this writing).  Settings are added all the time, so this list should be updated somehow.  Also, see all '''[[:Category:Settings|documented settings]]'''.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Below you will find the list of all known settings (as of this writing).  Settings are added all the time, so this list should be updated somehow.  Also, see all '''[[:Category:Settings|documented settings]]'''.</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td> <td colspan="2" class="diff-lineno">Line 8:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>If you feel like documenting them, and what they do, feel free.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>If you feel like documenting them, and what they do, feel free.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===A===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[active_selections]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[active_selections]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[all_states]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[all_states]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l33" >Line 33:</td> <td colspan="2" class="diff-lineno">Line 37:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[auto_show_spheres]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[auto_show_spheres]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[auto_zoom]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[auto_zoom]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===B===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[backface_cull]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[backface_cull]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[batch_prefix]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[batch_prefix]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l39" >Line 39:</td> <td colspan="2" class="diff-lineno">Line 45:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[button_mode]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[button_mode]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[button_mode_name]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[button_mode_name]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===C===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cache_display]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cache_display]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cache_frames]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cache_frames]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l120" >Line 120:</td> <td colspan="2" class="diff-lineno">Line 128:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cull_spheres]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cull_spheres]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cylinder_shader_ff_workaround]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cylinder_shader_ff_workaround]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===D===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_color]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_color]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_gap]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_gap]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l146" >Line 146:</td> <td colspan="2" class="diff-lineno">Line 156:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dot_width]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dot_width]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[draw_frames]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[draw_frames]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===E===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[editor_auto_dihedral]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[editor_auto_dihedral]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[editor_auto_origin]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[editor_auto_origin]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l154" >Line 154:</td> <td colspan="2" class="diff-lineno">Line 166:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ellipsoid_scale]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ellipsoid_scale]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ellipsoid_transparency]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ellipsoid_transparency]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===F===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[fast_idle]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[fast_idle]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[fetch_path]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[fetch_path]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l164" >Line 164:</td> <td colspan="2" class="diff-lineno">Line 178:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[frame]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[frame]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[full_screen]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[full_screen]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===G===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[gamma]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[gamma]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[gaussian_b_adjust]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[gaussian_b_adjust]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l183" >Line 183:</td> <td colspan="2" class="diff-lineno">Line 199:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[group_auto_mode]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[group_auto_mode]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[group_full_member_names]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[group_full_member_names]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===H===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[h_bond_cone]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[h_bond_cone]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[h_bond_cutoff_center]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[h_bond_cutoff_center]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l195" >Line 195:</td> <td colspan="2" class="diff-lineno">Line 213:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[hide_long_bonds]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[hide_long_bonds]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[hide_underscore_names]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[hide_underscore_names]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===I===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[idle_delay]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[idle_delay]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ignore_case]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ignore_case]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l207" >Line 207:</td> <td colspan="2" class="diff-lineno">Line 227:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[internal_prompt]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[internal_prompt]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[isomesh_auto_state]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[isomesh_auto_state]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===J===</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===K===</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===L===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[label_angle_digits]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[label_angle_digits]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[label_color]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[label_color]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l237" >Line 237:</td> <td colspan="2" class="diff-lineno">Line 263:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[log_conformations]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[log_conformations]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[logging]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[logging]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===M===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[map_auto_expand_sym]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[map_auto_expand_sym]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[matrix_mode]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[matrix_mode]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l275" >Line 275:</td> <td colspan="2" class="diff-lineno">Line 303:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[movie_rock]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[movie_rock]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[multiplex]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[multiplex]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===N===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[no_idle]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[no_idle]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[nonbonded_size]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[nonbonded_size]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l283" >Line 283:</td> <td colspan="2" class="diff-lineno">Line 313:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[normalize_o_maps]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[normalize_o_maps]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[nvidia_bugs]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[nvidia_bugs]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===O===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[opaque_background]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[opaque_background]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[orthoscopic]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[orthoscopic]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[overlay]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[overlay]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[overlay_lines]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[overlay_lines]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===P===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pdb_conect_all]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pdb_conect_all]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pdb_discrete_chains]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pdb_discrete_chains]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l318" >Line 318:</td> <td colspan="2" class="diff-lineno">Line 352:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pymol_space_max_red]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pymol_space_max_red]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pymol_space_min_factor]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[pymol_space_min_factor]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===Q===</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===R===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[raise_exceptions]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[raise_exceptions]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ramp_blend_nearby_colors]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[ramp_blend_nearby_colors]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l413" >Line 413:</td> <td colspan="2" class="diff-lineno">Line 451:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[roving_spheres]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[roving_spheres]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[roving_sticks]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[roving_sticks]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===S===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[scene_animation]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[scene_animation]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[scene_animation_duration]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[scene_animation_duration]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l589" >Line 589:</td> <td colspan="2" class="diff-lineno">Line 629:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[sweep_phase]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[sweep_phase]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[sweep_speed]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[sweep_speed]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===T===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[test1]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[test1]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[test2]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[test2]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l601" >Line 601:</td> <td colspan="2" class="diff-lineno">Line 643:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[trim_dots]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[trim_dots]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[two_sided_lighting]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[two_sided_lighting]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===U===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[use_display_lists]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[use_display_lists]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===V===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence_default]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[valence_default]]</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l607" >Line 607:</td> <td colspan="2" class="diff-lineno">Line 653:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[validate_object_names]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[validate_object_names]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[virtual_trackball]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[virtual_trackball]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===W===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[wildcard]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[wildcard]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[wizard_prompt_mode]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[wizard_prompt_mode]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[wrap_output]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[wrap_output]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===X===</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===Y===</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===Z===</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Settings|All Settings]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Settings|All Settings]]</div></td></tr> </table>

Jaredsampson https://wiki.pymol.org/index.php?title=Settings&diff=10154&oldid=prev 2012-08-18T04:41:54Z

<p>Added cylinder_shader_ff_workaround</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 04:41, 18 August 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l119" >Line 119:</td> <td colspan="2" class="diff-lineno">Line 119:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[coulomb_units_factor]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[coulomb_units_factor]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cull_spheres]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[cull_spheres]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[cylinder_shader_ff_workaround]]</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_color]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_color]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_gap]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[dash_gap]]</div></td></tr> </table>

TakanoriNakane https://wiki.pymol.org/index.php?title=Settings&diff=10153&oldid=prev 2010-06-29T19:13:32Z

<p>Added surface_cavity settings, but no pages for 2 of them.</p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 19:13, 29 June 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l559" >Line 559:</td> <td colspan="2" class="diff-lineno">Line 559:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_carve_selection]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_carve_selection]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_carve_state]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_carve_state]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[surface_cavity_cutoff]]</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[surface_cavity_mode]]</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[surface_cavity_radius]]</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_circumscribe]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_circumscribe]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_clear_cutoff]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[surface_clear_cutoff]]</div></td></tr> </table>

Saper https://wiki.pymol.org/index.php?title=Settings&diff=10152&oldid=prev 2009-07-21T19:30:26Z

<p>fixed grammar/spelling in first sentence (incredible &gt;&gt; incredibly)</p> <p><b>New page</b></p><div>PyMOL is incredibly useful because of its flexibility. Almost any setting can be tweaked to give you the ability to make your scenes appear just as you want. Each command usually comes with one or more settings. For example, the [[ray]] command comes with '''50''' settings!<br /> <br /> Below you will find the list of all known settings (as of this writing). Settings are added all the time, so this list should be updated somehow. Also, see all '''[[:Category:Settings|documented settings]]'''.<br /> <br /> If you feel like documenting them, and what they do, feel free.<br /> <br /> [[active_selections]]<br /> [[all_states]]<br /> [[ambient]]<br /> [[angle_color]]<br /> [[angle_label_position]]<br /> [[angle_size]]<br /> [[animation]]<br /> [[animation_duration]]<br /> [[antialias]]<br /> [[async_builds]]<br /> [[ati_bugs]]<br /> [[atom_name_wildcard]]<br /> [[auto_classify_atoms]]<br /> [[auto_color]]<br /> [[auto_copy_images]]<br /> [[auto_defer_builds]]<br /> [[auto_dss]]<br /> [[auto_hide_selections]]<br /> [[auto_indicate_flags]]<br /> [[auto_number_selections]]<br /> [[auto_remove_hydrogens]]<br /> [[auto_rename_duplicate_objects]]<br /> [[auto_sculpt]]<br /> [[auto_show_lines]]<br /> [[auto_show_nonbonded]]<br /> [[auto_show_selections]]<br /> [[auto_show_spheres]]<br /> [[auto_zoom]]<br /> [[backface_cull]]<br /> [[batch_prefix]]<br /> [[bg_rgb]]<br /> [[bonding_vdw_cutoff]]<br /> [[button_mode]]<br /> [[button_mode_name]]<br /> [[cache_display]]<br /> [[cache_frames]]<br /> [[cache_max]]<br /> [[cache_memory]]<br /> [[cache_mode]]<br /> [[cartoon_color]]<br /> [[cartoon_cylindrical_helices]]<br /> [[cartoon_debug]]<br /> [[cartoon_discrete_colors]]<br /> [[cartoon_dumbbell_length]]<br /> [[cartoon_dumbbell_radius]]<br /> [[cartoon_dumbbell_width]]<br /> [[cartoon_fancy_helices]]<br /> [[cartoon_fancy_sheets]]<br /> [[cartoon_flat_cycles]]<br /> [[cartoon_flat_sheets]]<br /> [[cartoon_helix_radius]]<br /> [[cartoon_highlight_color]]<br /> [[cartoon_ladder_color]]<br /> [[cartoon_ladder_mode]]<br /> [[cartoon_ladder_radius]]<br /> [[cartoon_loop_cap]]<br /> [[cartoon_loop_quality]]<br /> [[cartoon_loop_radius]]<br /> [[cartoon_nucleic_acid_color]]<br /> [[cartoon_nucleic_acid_mode]]<br /> [[cartoon_oval_length]]<br /> [[cartoon_oval_quality]]<br /> [[cartoon_oval_width]]<br /> [[cartoon_power]]<br /> [[cartoon_power_b]]<br /> [[cartoon_putty_quality]]<br /> [[cartoon_putty_radius]]<br /> [[cartoon_putty_range]]<br /> [[cartoon_putty_scale_max]]<br /> [[cartoon_putty_scale_min]]<br /> [[cartoon_putty_scale_power]]<br /> [[cartoon_putty_transform]]<br /> [[cartoon_rect_length]]<br /> [[cartoon_rect_width]]<br /> [[cartoon_refine]]<br /> [[cartoon_refine_normals]]<br /> [[cartoon_refine_tips]]<br /> [[cartoon_ring_color]]<br /> [[cartoon_ring_finder]]<br /> [[cartoon_ring_mode]]<br /> [[cartoon_ring_radius]]<br /> [[cartoon_ring_transparency]]<br /> [[cartoon_ring_width]]<br /> [[cartoon_round_helices]]<br /> [[cartoon_sampling]]<br /> [[cartoon_side_chain_helper]]<br /> [[cartoon_smooth_cycles]]<br /> [[cartoon_smooth_first]]<br /> [[cartoon_smooth_last]]<br /> [[cartoon_smooth_loops]]<br /> [[cartoon_throw]]<br /> [[cartoon_trace_atoms]]<br /> [[cartoon_transparency]]<br /> [[cartoon_tube_cap]]<br /> [[cartoon_tube_quality]]<br /> [[cartoon_tube_radius]]<br /> [[cavity_cull]]<br /> [[cgo_dot_radius]]<br /> [[cgo_dot_width]]<br /> [[cgo_ellipsoid_quality]]<br /> [[cgo_line_radius]]<br /> [[cgo_line_width]]<br /> [[cgo_ray_width_scale]]<br /> [[cgo_sphere_quality]]<br /> [[cgo_transparency]]<br /> [[clamp_colors]]<br /> [[cone_quality]]<br /> [[connect_bonded]]<br /> [[connect_cutoff]]<br /> [[connect_mode]]<br /> [[coulomb_cutoff]]<br /> [[coulomb_dielectric]]<br /> [[coulomb_units_factor]]<br /> [[cull_spheres]]<br /> [[dash_color]]<br /> [[dash_gap]]<br /> [[dash_length]]<br /> [[dash_radius]]<br /> [[dash_round_ends]]<br /> [[dash_width]]<br /> [[debug_pick]]<br /> [[defer_builds_mode]]<br /> [[defer_updates]]<br /> [[depth_cue]]<br /> [[dihedral_color]]<br /> [[dihedral_label_position]]<br /> [[dihedral_size]]<br /> [[direct]]<br /> [[dist_counter]]<br /> [[distance_exclusion]]<br /> [[dot_color]]<br /> [[dot_density]]<br /> [[dot_hydrogens]]<br /> [[dot_lighting]]<br /> [[dot_mode]]<br /> [[dot_normals]]<br /> [[dot_radius]]<br /> [[dot_solvent]]<br /> [[dot_width]]<br /> [[draw_frames]]<br /> [[editor_auto_dihedral]]<br /> [[editor_auto_origin]]<br /> [[editor_label_fragments]]<br /> [[ellipsoid_color]]<br /> [[ellipsoid_probability]]<br /> [[ellipsoid_quality]]<br /> [[ellipsoid_scale]]<br /> [[ellipsoid_transparency]]<br /> [[fast_idle]]<br /> [[fetch_path]]<br /> [[field_of_view]]<br /> [[fit_iterations]]<br /> [[fit_tolerance]]<br /> [[float_labels]]<br /> [[fog]]<br /> [[fog_start]]<br /> [[frame]]<br /> [[full_screen]]<br /> [[gamma]]<br /> [[gaussian_b_adjust]]<br /> [[gaussian_b_floor]]<br /> [[gaussian_resolution]]<br /> [[geometry_export_mode]]<br /> [[gl_ambient]]<br /> [[gradient_max_length]]<br /> [[gradient_min_length]]<br /> [[gradient_min_slope]]<br /> [[gradient_normal_min_dot]]<br /> [[gradient_spacing]]<br /> [[gradient_step_size]]<br /> [[gradient_symmetry]]<br /> [[grid_max]]<br /> [[grid_mode]]<br /> [[grid_slot]]<br /> [[group_arrow_prefix]]<br /> [[group_auto_mode]]<br /> [[group_full_member_names]]<br /> [[h_bond_cone]]<br /> [[h_bond_cutoff_center]]<br /> [[h_bond_cutoff_edge]]<br /> [[h_bond_exclusion]]<br /> [[h_bond_from_proton]]<br /> [[h_bond_max_angle]]<br /> [[h_bond_power_a]]<br /> [[h_bond_power_b]]<br /> [[half_bonds]]<br /> [[hash_max]]<br /> [[hide_long_bonds]]<br /> [[hide_underscore_names]]<br /> [[idle_delay]]<br /> [[ignore_case]]<br /> [[ignore_pdb_segi]]<br /> [[image_copy_always]]<br /> [[image_dots_per_inch]]<br /> [[internal_feedback]]<br /> [[internal_gui]]<br /> [[internal_gui_control_size]]<br /> [[internal_gui_mode]]<br /> [[internal_gui_width]]<br /> [[internal_prompt]]<br /> [[isomesh_auto_state]]<br /> [[label_angle_digits]]<br /> [[label_color]]<br /> [[label_digits]]<br /> [[label_dihedral_digits]]<br /> [[label_distance_digits]]<br /> [[label_font_id]]<br /> [[label_outline_color]]<br /> [[label_position]]<br /> [[label_shadow_mode]]<br /> [[label_size]]<br /> [[legacy_mouse_zoom]]<br /> [[legacy_vdw_radii]]<br /> [[light]]<br /> [[light2]]<br /> [[light3]]<br /> [[light4]]<br /> [[light5]]<br /> [[light6]]<br /> [[light7]]<br /> [[light8]]<br /> [[light9]]<br /> [[light_count]]<br /> [[line_color]]<br /> [[line_radius]]<br /> [[line_smooth]]<br /> [[line_stick_helper]]<br /> [[line_width]]<br /> [[log_box_selections]]<br /> [[log_conformations]]<br /> [[logging]]<br /> [[map_auto_expand_sym]]<br /> [[matrix_mode]]<br /> [[max_threads]]<br /> [[max_triangles]]<br /> [[mesh_carve_cutoff]]<br /> [[mesh_carve_selection]]<br /> [[mesh_carve_state]]<br /> [[mesh_clear_cutoff]]<br /> [[mesh_clear_selection]]<br /> [[mesh_clear_state]]<br /> [[mesh_color]]<br /> [[mesh_cutoff]]<br /> [[mesh_grid_max]]<br /> [[mesh_lighting]]<br /> [[mesh_mode]]<br /> [[mesh_negative_color]]<br /> [[mesh_negative_visible]]<br /> [[mesh_normals]]<br /> [[mesh_quality]]<br /> [[mesh_radius]]<br /> [[mesh_skip]]<br /> [[mesh_solvent]]<br /> [[mesh_type]]<br /> [[mesh_width]]<br /> [[min_mesh_spacing]]<br /> [[moe_separate_chains]]<br /> [[mouse_grid]]<br /> [[mouse_limit]]<br /> [[mouse_restart_movie_delay]]<br /> [[mouse_scale]]<br /> [[mouse_selection_mode]]<br /> [[mouse_wheel_scale]]<br /> [[movie_animate_by_frame]]<br /> [[movie_delay]]<br /> [[movie_fps]]<br /> [[movie_loop]]<br /> [[movie_rock]]<br /> [[multiplex]]<br /> [[no_idle]]<br /> [[nonbonded_size]]<br /> [[nonbonded_transparency]]<br /> [[normal_workaround]]<br /> [[normalize_ccp4_maps]]<br /> [[normalize_grd_maps]]<br /> [[normalize_o_maps]]<br /> [[nvidia_bugs]]<br /> [[opaque_background]]<br /> [[orthoscopic]]<br /> [[overlay]]<br /> [[overlay_lines]]<br /> [[pdb_conect_all]]<br /> [[pdb_discrete_chains]]<br /> [[pdb_echo_tags]]<br /> [[pdb_formal_charges]]<br /> [[pdb_hetatm_guess_valences]]<br /> [[pdb_hetatm_sort]]<br /> [[pdb_honor_model_number]]<br /> [[pdb_insertions_go_first]]<br /> [[pdb_insure_orthogonal]]<br /> [[pdb_literal_names]]<br /> [[pdb_no_end_record]]<br /> [[pdb_reformat_names_mode]]<br /> [[pdb_retain_ids]]<br /> [[pdb_standard_order]]<br /> [[pdb_truncate_residue_name]]<br /> [[pdb_unbond_cations]]<br /> [[pdb_use_ter_records]]<br /> [[pickable]]<br /> [[png_file_gamma]]<br /> [[png_screen_gamma]]<br /> [[power]]<br /> [[pqr_no_chain_id]]<br /> [[presentation]]<br /> [[presentation_auto_quit]]<br /> [[presentation_auto_start]]<br /> [[presentation_mode]]<br /> [[preserve_chempy_ids]]<br /> [[pymol_space_max_blue]]<br /> [[pymol_space_max_green]]<br /> [[pymol_space_max_red]]<br /> [[pymol_space_min_factor]]<br /> [[raise_exceptions]]<br /> [[ramp_blend_nearby_colors]]<br /> [[rank_assisted_sorts]]<br /> [[ray_blend_blue]]<br /> [[ray_blend_colors]]<br /> [[ray_blend_green]]<br /> [[ray_blend_red]]<br /> [[ray_clip_shadows]]<br /> [[ray_color_ramps]]<br /> [[ray_default_renderer]]<br /> [[ray_direct_shade]]<br /> [[ray_hint_camera]]<br /> [[ray_hint_shadow]]<br /> [[ray_improve_shadows]]<br /> [[ray_interior_color]]<br /> [[ray_interior_mode]]<br /> [[ray_interior_reflect]]<br /> [[ray_interior_shadows]]<br /> [[ray_interior_texture]]<br /> [[ray_label_specular]]<br /> [[ray_legacy_lighting]]<br /> [[ray_max_passes]]<br /> [[ray_opaque_background]]<br /> [[ray_orthoscopic]]<br /> [[ray_oversample_cutoff]]<br /> [[ray_pixel_scale]]<br /> [[ray_scatter]]<br /> [[ray_shadow]]<br /> [[ray_shadow_decay_factor]]<br /> [[ray_shadow_decay_range]]<br /> [[ray_shadow_fudge]]<br /> [[ray_shadows]]<br /> [[ray_spec_local]]<br /> [[ray_texture]]<br /> [[ray_texture_settings]]<br /> [[ray_trace_color]]<br /> [[ray_trace_depth_factor]]<br /> [[ray_trace_disco_factor]]<br /> [[ray_trace_fog]]<br /> [[ray_trace_fog_start]]<br /> [[ray_trace_frames]]<br /> [[ray_trace_gain]]<br /> [[ray_trace_mode]]<br /> [[ray_trace_persist_cutoff]]<br /> [[ray_trace_slope_factor]]<br /> [[ray_trace_trans_cutoff]]<br /> [[ray_transparency_contrast]]<br /> [[ray_transparency_oblique]]<br /> [[ray_transparency_oblique_power]]<br /> [[ray_transparency_shadows]]<br /> [[ray_transparency_spec_cut]]<br /> [[ray_transparency_specular]]<br /> [[ray_triangle_fudge]]<br /> [[reflect]]<br /> [[reflect_power]]<br /> [[retain_order]]<br /> [[ribbon_color]]<br /> [[ribbon_nucleic_acid_mode]]<br /> [[ribbon_power]]<br /> [[ribbon_power_b]]<br /> [[ribbon_radius]]<br /> [[ribbon_sampling]]<br /> [[ribbon_side_chain_helper]]<br /> [[ribbon_smooth]]<br /> [[ribbon_throw]]<br /> [[ribbon_trace_atoms]]<br /> [[ribbon_width]]<br /> [[robust_logs]]<br /> [[rock]]<br /> [[rock_delay]]<br /> [[roving_byres]]<br /> [[roving_cartoon]]<br /> [[roving_delay]]<br /> [[roving_detail]]<br /> [[roving_isomesh]]<br /> [[roving_isosurface]]<br /> [[roving_labels]]<br /> [[roving_lines]]<br /> [[roving_map1_level]]<br /> [[roving_map1_name]]<br /> [[roving_map2_level]]<br /> [[roving_map2_name]]<br /> [[roving_map3_level]]<br /> [[roving_map3_name]]<br /> [[roving_nb_spheres]]<br /> [[roving_nonbonded]]<br /> [[roving_origin]]<br /> [[roving_origin_z]]<br /> [[roving_origin_z_cushion]]<br /> [[roving_polar_contacts]]<br /> [[roving_polar_cutoff]]<br /> [[roving_ribbon]]<br /> [[roving_selection]]<br /> [[roving_spheres]]<br /> [[roving_sticks]]<br /> [[scene_animation]]<br /> [[scene_animation_duration]]<br /> [[scene_buttons]]<br /> [[scene_buttons_mode]]<br /> [[scene_current_name]]<br /> [[scene_loop]]<br /> [[scene_restart_movie_delay]]<br /> [[scenes_changed]]<br /> [[sculpt_angl_weight]]<br /> [[sculpt_auto_center]]<br /> [[sculpt_avd_excl]]<br /> [[sculpt_avd_gap]]<br /> [[sculpt_avd_range]]<br /> [[sculpt_avd_weight]]<br /> [[sculpt_bond_weight]]<br /> [[sculpt_field_mask]]<br /> [[sculpt_hb_overlap]]<br /> [[sculpt_hb_overlap_base]]<br /> [[sculpt_line_weight]]<br /> [[sculpt_max_max]]<br /> [[sculpt_max_min]]<br /> [[sculpt_max_scale]]<br /> [[sculpt_max_weight]]<br /> [[sculpt_memory]]<br /> [[sculpt_min_max]]<br /> [[sculpt_min_min]]<br /> [[sculpt_min_scale]]<br /> [[sculpt_min_weight]]<br /> [[sculpt_nb_interval]]<br /> [[sculpt_plan_weight]]<br /> [[sculpt_pyra_weight]]<br /> [[sculpt_tors_tolerance]]<br /> [[sculpt_tors_weight]]<br /> [[sculpt_tri_max]]<br /> [[sculpt_tri_min]]<br /> [[sculpt_tri_mode]]<br /> [[sculpt_tri_scale]]<br /> [[sculpt_tri_weight]]<br /> [[sculpt_vdw_scale]]<br /> [[sculpt_vdw_scale14]]<br /> [[sculpt_vdw_vis_max]]<br /> [[sculpt_vdw_vis_mid]]<br /> [[sculpt_vdw_vis_min]]<br /> [[sculpt_vdw_vis_mode]]<br /> [[sculpt_vdw_weight]]<br /> [[sculpt_vdw_weight14]]<br /> [[sculpting]]<br /> [[sculpting_cycles]]<br /> [[sdof_drag_scale]]<br /> [[secondary_structure]]<br /> [[security]]<br /> [[sel_counter]]<br /> [[selection_overlay]]<br /> [[selection_round_points]]<br /> [[selection_visible_only]]<br /> [[selection_width]]<br /> [[selection_width_max]]<br /> [[selection_width_scale]]<br /> [[seq_view]]<br /> [[seq_view_alignment]]<br /> [[seq_view_color]]<br /> [[seq_view_discrete_by_state]]<br /> [[seq_view_fill_char]]<br /> [[seq_view_fill_color]]<br /> [[seq_view_format]]<br /> [[seq_view_label_color]]<br /> [[seq_view_label_mode]]<br /> [[seq_view_label_spacing]]<br /> [[seq_view_label_start]]<br /> [[seq_view_location]]<br /> [[seq_view_overlay]]<br /> [[seq_view_unaligned_color]]<br /> [[seq_view_unaligned_mode]]<br /> [[session_cache_optimize]]<br /> [[session_changed]]<br /> [[session_compression]]<br /> [[session_file]]<br /> [[session_migration]]<br /> [[session_version_check]]<br /> [[shininess]]<br /> [[show_alpha_checker]]<br /> [[show_progress]]<br /> [[simplify_display_lists]]<br /> [[single_image]]<br /> [[slice_dynamic_grid]]<br /> [[slice_dynamic_grid_resolution]]<br /> [[slice_grid]]<br /> [[slice_height_map]]<br /> [[slice_height_scale]]<br /> [[slice_track_camera]]<br /> [[slow_idle]]<br /> [[smooth_color_triangle]]<br /> [[solvent_radius]]<br /> [[spec_count]]<br /> [[spec_direct]]<br /> [[spec_direct_power]]<br /> [[spec_power]]<br /> [[spec_reflect]]<br /> [[specular]]<br /> [[specular_intensity]]<br /> [[sphere_color]]<br /> [[sphere_mode]]<br /> [[sphere_point_max_size]]<br /> [[sphere_point_size]]<br /> [[sphere_quality]]<br /> [[sphere_scale]]<br /> [[sphere_solvent]]<br /> [[sphere_transparency]]<br /> [[spheroid_fill]]<br /> [[spheroid_scale]]<br /> [[spheroid_smooth]]<br /> [[ss_helix_phi_exclude]]<br /> [[ss_helix_phi_include]]<br /> [[ss_helix_phi_target]]<br /> [[ss_helix_psi_exclude]]<br /> [[ss_helix_psi_include]]<br /> [[ss_helix_psi_target]]<br /> [[ss_strand_phi_exclude]]<br /> [[ss_strand_phi_include]]<br /> [[ss_strand_phi_target]]<br /> [[ss_strand_psi_exclude]]<br /> [[ss_strand_psi_include]]<br /> [[ss_strand_psi_target]]<br /> [[state]]<br /> [[static_singletons]]<br /> [[stereo]]<br /> [[stereo_angle]]<br /> [[stereo_double_pump_mono]]<br /> [[stereo_mode]]<br /> [[stereo_shift]]<br /> [[stick_ball]]<br /> [[stick_ball_ratio]]<br /> [[stick_color]]<br /> [[stick_fixed_radius]]<br /> [[stick_nub]]<br /> [[stick_overlap]]<br /> [[stick_quality]]<br /> [[stick_radius]]<br /> [[stick_transparency]]<br /> [[stick_valence_scale]]<br /> [[stop_on_exceptions]]<br /> [[suppress_hidden]]<br /> [[surface_best]]<br /> [[surface_carve_cutoff]]<br /> [[surface_carve_normal_cutoff]]<br /> [[surface_carve_selection]]<br /> [[surface_carve_state]]<br /> [[surface_circumscribe]]<br /> [[surface_clear_cutoff]]<br /> [[surface_clear_selection]]<br /> [[surface_clear_state]]<br /> [[surface_color]]<br /> [[surface_debug]]<br /> [[surface_miserable]]<br /> [[surface_mode]]<br /> [[surface_negative_color]]<br /> [[surface_negative_visible]]<br /> [[surface_normal]]<br /> [[surface_optimize_subsets]]<br /> [[surface_poor]]<br /> [[surface_proximity]]<br /> [[surface_quality]]<br /> [[surface_ramp_above_mode]]<br /> [[surface_solvent]]<br /> [[surface_trim_cutoff]]<br /> [[surface_trim_factor]]<br /> [[surface_type]]<br /> [[suspend_updates]]<br /> [[swap_dsn6_bytes]]<br /> [[sweep_angle]]<br /> [[sweep_mode]]<br /> [[sweep_phase]]<br /> [[sweep_speed]]<br /> [[test1]]<br /> [[test2]]<br /> [[text]]<br /> [[texture_fonts]]<br /> [[trace_atoms_mode]]<br /> [[transparency]]<br /> [[transparency_global_sort]]<br /> [[transparency_mode]]<br /> [[transparency_picking_mode]]<br /> [[triangle_max_passes]]<br /> [[trim_dots]]<br /> [[two_sided_lighting]]<br /> [[use_display_lists]]<br /> [[valence]]<br /> [[valence_default]]<br /> [[valence_size]]<br /> [[validate_object_names]]<br /> [[virtual_trackball]]<br /> [[wildcard]]<br /> [[wizard_prompt_mode]]<br /> [[wrap_output]]<br /> <br /> [[Category:Settings|All Settings]]</div>

Jaredsampson https://wiki.pymol.org/index.php?title=Settings&diff=10145&oldid=prev 2008-04-24T22:34:08Z

<p></p> <p><b>New page</b></p><div>PyMOL is incredible useful because of its flexibility. Almost any setting can be tweaked to give you the ability to make your scenes appear just as you want. Each command usually comes with one or more settings. For example, the [[ray]] command comes with '''50''' settings!<br /> <br /> Below you will find the list of all known settings (as of this writing). Settings are added all the time, so this list should be updated somehow. Also, see all '''[[:Category:Settings|documented settings]]'''.<br /> <br /> If you feel like documenting them, and what they do, feel free.<br /> <br /> active_selections ray_default_renderer <br /> [[all_states]] ray_direct_shade <br /> [[ambient]] ray_hint_camera <br /> angle_label_position ray_hint_shadow <br /> angle_size ray_improve_shadows <br /> animation ray_interior_color <br /> animation_duration ray_interior_mode <br /> [[antialias]] ray_interior_reflect <br /> async_builds ray_interior_shadows <br /> [[atom_name_wildcard]] ray_interior_texture <br /> auto_classify_atoms ray_legacy_lighting <br /> auto_color ray_max_passes <br /> auto_dss [[ray_opaque_background]] <br /> auto_hide_selections [[ray_orthoscopic]] <br /> auto_indicate_flags ray_oversample_cutoff <br /> auto_number_selections ray_pixel_scale <br /> auto_remove_hydrogens [[ray_shadow]] <br /> auto_sculpt ray_shadow_decay_factor <br /> auto_show_lines ray_shadow_decay_range <br /> auto_show_nonbonded ray_shadow_fudge <br /> auto_show_selections [[ray_shadows]] <br /> auto_show_spheres ray_texture <br /> [[auto_zoom]] ray_texture_settings <br /> [[backface_cull]] ray_trace_depth_factor <br /> batch_prefix ray_trace_disco_factor <br /> [[bg_rgb]] [[ray_trace_fog]] <br /> bonding_vdw_cutoff ray_trace_fog_start <br /> button_mode [[ray_trace_frames]] <br /> button_mode_name ray_trace_gain <br /> cache_display [[Ray#Modes|ray_trace_mode]]<br /> cache_frames ray_trace_slope_factor <br /> cache_memory ray_transparency_contrast <br /> [[cartoon_color]] ray_transparency_shadows <br /> [[Cartoon Helix Settings|cartoon_cylindrical_helices]] ray_transparency_spec_cut <br /> cartoon_debug ray_transparency_specular <br /> [[cartoon_discrete_colors]] ray_triangle_fudge <br /> [[cartoon_dumbbell_length]] [[reflect]] <br /> [[cartoon_dumbbell_radius]] reflect_power <br /> [[cartoon_dumbbell_width]] [[retain_order]] <br /> [[Cartoon Helix Settings|cartoon_fancy_helices]] [[ribbon_color]] <br /> [[cartoon_fancy_sheets]] ribbon_nucleic_acid_mode <br /> [[cartoon_flat_cycles]] ribbon_power <br /> [[cartoon_flat_sheets]] ribbon_power_b <br /> [[Cartoon_helix_radius]] ribbon_radius <br /> [[cartoon_highlight_color]] [[ribbon_sampling]] <br /> cartoon_ladder_color ribbon_side_chain_helper <br /> cartoon_ladder_mode [[ribbon_smooth]] <br /> cartoon_ladder_radius ribbon_throw <br /> cartoon_loop_cap ribbon_trace_atoms <br /> cartoon_loop_quality [[ribbon_width]] <br /> cartoon_loop_radius robust_logs <br /> [[cartoon_nucleic_acid_color]] rock_delay <br /> [[cartoon_nucleic_acid_mode]] roving_byres <br /> [[cartoon_oval_length]] roving_cartoon <br /> [[cartoon_oval_quality]] roving_delay <br /> [[cartoon_oval_width]] roving_detail <br /> cartoon_power roving_isomesh <br /> cartoon_power_b roving_isosurface <br /> cartoon_putty_quality roving_labels <br /> cartoon_putty_radius roving_lines <br /> cartoon_putty_range roving_map1_level <br /> cartoon_putty_scale_max roving_map1_name <br /> cartoon_putty_scale_min roving_map2_level <br /> cartoon_putty_scale_power roving_map2_name <br /> [[cartoon_rect_length]] roving_map3_level <br /> [[cartoon_rect_width]] roving_map3_name <br /> cartoon_refine roving_nb_spheres <br /> cartoon_refine_normals roving_nonbonded <br /> cartoon_refine_tips roving_origin <br /> cartoon_ring_color roving_origin_z <br /> cartoon_ring_finder roving_origin_z_cushion <br /> [[cartoon_ring_mode]] roving_polar_contacts <br /> cartoon_ring_radius roving_polar_cutoff <br /> [[cartoon_ring_transparency]] roving_ribbon <br /> cartoon_ring_width roving_selection <br /> [[cartoon_round_helices]] roving_spheres <br /> [[cartoon_sampling]] roving_sticks <br /> [[cartoon_side_chain_helper]] scene_animation <br /> cartoon_smooth_cycles scene_animation_duration <br /> cartoon_smooth_first scene_current_name <br /> cartoon_smooth_last scene_loop <br /> [[cartoon_smooth_loops]] scene_restart_movie_delay <br /> cartoon_throw scenes_changed <br /> cartoon_trace_atoms sculpt_angl_weight <br /> [[cartoon_transparency]] sculpt_auto_center <br /> cartoon_tube_cap sculpt_avd_excl <br /> cartoon_tube_quality sculpt_avd_gap <br /> cartoon_tube_radius sculpt_avd_range <br /> [[cavity_cull]] sculpt_avd_weight <br /> cgo_dot_radius sculpt_bond_weight <br /> cgo_dot_width sculpt_field_mask <br /> cgo_line_radius sculpt_hb_overlap <br /> cgo_line_width sculpt_hb_overlap_base <br /> cgo_ray_width_scale sculpt_line_weight <br /> cgo_sphere_quality sculpt_max_max <br /> cgo_transparency sculpt_max_min <br /> clamp_colors sculpt_max_scale <br /> connect_bonded sculpt_max_weight <br /> connect_cutoff sculpt_memory <br /> connect_mode sculpt_min_max <br /> coulomb_cutoff sculpt_min_min <br /> coulomb_dielectric sculpt_min_scale <br /> coulomb_units_factor sculpt_min_weight <br /> cull_spheres sculpt_nb_interval <br /> [[Dash_Gap]] sculpt_plan_weight <br /> [[Dash_Length]] sculpt_pyra_weight <br /> [[Dash_Radius]] sculpt_tors_tolerance <br /> [[Dash_Round_Ends]] sculpt_tors_weight <br /> dash_width sculpt_tri_max <br /> debug_pick sculpt_tri_min <br /> defer_builds_mode sculpt_tri_mode <br /> defer_updates sculpt_tri_scale <br /> [[depth_cue]] sculpt_tri_weight <br /> dihedral_label_position sculpt_vdw_scale <br /> dihedral_size sculpt_vdw_scale14 <br /> direct sculpt_vdw_vis_max <br /> dist_counter sculpt_vdw_vis_mid <br /> distance_exclusion sculpt_vdw_vis_min <br /> dot_color sculpt_vdw_vis_mode <br /> dot_density sculpt_vdw_weight <br /> dot_hydrogens sculpt_vdw_weight14 <br /> dot_lighting sculpting <br /> dot_mode sculpting_cycles <br /> dot_normals secondary_structure <br /> [[dot_radius]] security <br /> dot_solvent sel_counter<br /> [[dot_width]] selection_overlay <br /> draw_frames selection_round_points <br /> editor_auto_dihedral selection_visible_only <br /> editor_auto_origin [[selection_width]] <br /> editor_label_fragments selection_width_max <br /> fast_idle selection_width_scale <br /> fetch_path [[seq_view]] <br /> [[Field_Of_View]] seq_view_alignment <br /> fit_iterations seq_view_color <br /> fit_tolerance seq_view_discrete_by_state <br /> float_labels seq_view_fill_char <br /> [[fog]] seq_view_fill_color <br /> [[fog_start]] seq_view_format <br /> frame seq_view_label_color <br /> full_screen seq_view_label_mode <br /> gamma seq_view_label_spacing <br /> gaussian_b_adjust seq_view_label_start <br /> gaussian_b_floor [[seq_view_location]] <br /> gaussian_resolution seq_view_overlay <br /> gl_ambient seq_view_unaligned_color <br /> [[grid_mode]]<br /> [[grid_slot]]<br /> h_bond_cone seq_view_unaligned_mode <br /> h_bond_cutoff_center session_file <br /> h_bond_cutoff_edge session_migration <br /> h_bond_exclusion session_version_check <br /> h_bond_max_angle [[shininess]]<br /> h_bond_power_a show_alpha_checker <br /> h_bond_power_b show_progress <br /> [[half_bonds]] simplify_display_lists <br /> [[hash_max]] single_image <br /> hide_underscore_names slice_dynamic_grid <br /> idle_delay slice_dynamic_grid_resolution<br /> ignore_case slice_grid <br /> ignore_pdb_segi slice_height_map <br /> image_dots_per_inch slice_height_scale <br /> internal_feedback slice_track_camera <br /> [[Internal Gui|internal_gui]] slow_idle <br /> internal_gui_control_size smooth_color_triangle <br /> internal_gui_mode solvent_radius <br /> internal_gui_width spec_count <br /> [[internal_prompt]] spec_direct <br /> isomesh_auto_state spec_direct_power <br /> [[label_color]] spec_power <br /> [[Label_font_id]] [[spec_reflect]] <br /> [[Label_outline_color]] specular <br /> [[label_position]] specular_intensity <br /> [[label_shadow_mode]] [[sphere_color]] <br /> [[label_size]] [[sphere_mode]] <br /> legacy_mouse_zoom sphere_point_max_size <br /> legacy_vdw_radii sphere_point_size <br /> light [[sphere_quality]] <br /> light2 [[sphere_scale]] <br /> light3 sphere_solvent <br /> light4 [[sphere_transparency]] <br /> light5 spheroid_fill <br /> light6 spheroid_scale <br /> light7 spheroid_smooth <br /> light8 ss_helix_phi_exclude <br /> light9 ss_helix_phi_include <br /> [[light_count]] ss_helix_phi_target <br /> line_radius ss_helix_psi_exclude <br /> [[line_smooth]] ss_helix_psi_include <br /> line_stick_helper ss_helix_psi_target <br /> line_width ss_strand_phi_exclude <br /> log_box_selections ss_strand_phi_include <br /> log_conformations ss_strand_phi_target <br /> logging ss_strand_psi_exclude <br /> matrix_mode ss_strand_psi_include <br /> max_threads ss_strand_psi_target <br /> max_triangles state <br /> [[mesh_color]] static_singletons <br /> [[mesh_lighting]] [[stereo]]<br /> [[mesh_mode]] [[stereo_angle]]<br /> mesh_normals stereo_double_pump_mono <br /> [[mesh_quality]] [[stereo_mode]] <br /> mesh_radius stereo_shift <br /> mesh_solvent [[stick_ball]] <br /> [[mesh_type]] [[stick_ball_ratio]] <br /> [[mesh_width]] [[stick_color]]<br /> [[min_mesh_spacing]] stick_fixed_radius <br /> mouse_limit [[stick_nub]] <br /> mouse_restart_movie_delay stick_overlap <br /> mouse_scale stick_quality <br /> mouse_selection_mode stick_radius <br /> movie_delay [[stick_transparency]] <br /> movie_loop stick_valence_scale <br /> multiplex stop_on_exceptions <br /> no_idle surface_best <br /> nonbonded_size surface_carve_cutoff <br /> normal_workaround surface_carve_selection <br /> normalize_ccp4_maps surface_carve_state <br /> normalize_grd_maps surface_circumscribe <br /> normalize_o_maps surface_clear_cutoff <br /> nvidia_bugs surface_clear_selection <br /> opaque_background surface_clear_state <br /> [[orthoscopic]] surface_color <br /> overlay surface_debug <br /> overlay_lines surface_miserable <br /> pdb_conect_all [[surface_mode]] <br /> pdb_discrete_chains surface_normal <br /> pdb_echo_tags surface_optimize_subsets <br /> pdb_hetatm_sort surface_poor <br /> pdb_honor_model_number surface_proximity <br /> pdb_insertions_go_first surface_quality <br /> pdb_insure_orthogonal surface_ramp_above_mode <br /> pdb_literal_names surface_solvent <br /> pdb_no_end_record surface_trim_cutoff <br /> pdb_reformat_names_mode surface_trim_factor <br /> [[pdb_retain_ids]] surface_type <br /> pdb_standard_order suspend_updates <br /> pdb_truncate_residue_name swap_dsn6_bytes <br /> pdb_unbond_cations sweep_angle <br /> pdb_use_ter_records sweep_mode <br /> [[pickable]] sweep_phase <br /> png_file_gamma sweep_speed <br /> png_screen_gamma test1 <br /> power test2 <br /> pqr_no_chain_id text <br /> presentation texture_fonts <br /> presentation_auto_quit [[transparency]] <br /> presentation_auto_start transparency_mode <br /> presentation_mode transparency_picking_mode <br /> preserve_chempy_ids triangle_max_passes <br /> pymol_space_max_blue trim_dots <br /> pymol_space_max_green [[two_sided_lighting]]<br /> pymol_space_max_red use_display_lists <br /> pymol_space_min_factor [[valence]] <br /> raise_exceptions valence_default <br /> rank_assisted_sorts valence_size <br /> ray_blend_blue validate_object_names <br /> ray_blend_colors [[virtual_trackball]] <br /> ray_blend_green wildcard <br /> ray_blend_red wizard_prompt_mode <br /> ray_color_ramps wrap_output <br /> <br /> [[Category:Settings|All Settings]]</div>

Martoss https://wiki.pymol.org/index.php?title=Settings&diff=10142&oldid=prev 2008-02-22T13:25:11Z

<p>made a link a bit more explicit</p> <p><b>New page</b></p><div>These are all the PyMol settings. If you feel like documenting them, and what they do, feel free. 43 done, 475 to go! See also [[:Category:Settings]]<br /> <br /> active_selections ray_default_renderer <br /> [[all_states]] ray_direct_shade <br /> [[ambient]] ray_hint_camera <br /> angle_label_position ray_hint_shadow <br /> angle_size ray_improve_shadows <br /> animation ray_interior_color <br /> animation_duration ray_interior_mode <br /> [[antialias]] ray_interior_reflect <br /> async_builds ray_interior_shadows <br /> [[atom_name_wildcard]] ray_interior_texture <br /> auto_classify_atoms ray_legacy_lighting <br /> auto_color ray_max_passes <br /> auto_dss [[ray_opaque_background]] <br /> auto_hide_selections [[ray_orthoscopic]] <br /> auto_indicate_flags ray_oversample_cutoff <br /> auto_number_selections ray_pixel_scale <br /> auto_remove_hydrogens [[ray_shadow]] <br /> auto_sculpt ray_shadow_decay_factor <br /> auto_show_lines ray_shadow_decay_range <br /> auto_show_nonbonded ray_shadow_fudge <br /> auto_show_selections [[ray_shadows]] <br /> auto_show_spheres ray_texture <br /> [[auto_zoom]] ray_texture_settings <br /> [[backface_cull]] ray_trace_depth_factor <br /> batch_prefix ray_trace_disco_factor <br /> [[bg_rgb]] [[ray_trace_fog]] <br /> bonding_vdw_cutoff ray_trace_fog_start <br /> button_mode [[ray_trace_frames]] <br /> button_mode_name ray_trace_gain <br /> cache_display [[Ray#Modes|ray_trace_mode]]<br /> cache_frames ray_trace_slope_factor <br /> cache_memory ray_transparency_contrast <br /> [[cartoon_color]] ray_transparency_shadows <br /> [[Cartoon Helix Settings|cartoon_cylindrical_helices]] ray_transparency_spec_cut <br /> cartoon_debug ray_transparency_specular <br /> [[cartoon_discrete_colors]] ray_triangle_fudge <br /> [[cartoon_dumbbell_length]] [[reflect]] <br /> [[cartoon_dumbbell_radius]] reflect_power <br /> [[cartoon_dumbbell_width]] retain_order <br /> [[Cartoon Helix Settings|cartoon_fancy_helices]] [[ribbon_color]] <br /> [[cartoon_fancy_sheets]] ribbon_nucleic_acid_mode <br /> [[cartoon_flat_cycles]] ribbon_power <br /> [[cartoon_flat_sheets]] ribbon_power_b <br /> [[Cartoon_helix_radius]] ribbon_radius <br /> [[cartoon_highlight_color]] [[ribbon_sampling]] <br /> cartoon_ladder_color ribbon_side_chain_helper <br /> cartoon_ladder_mode [[ribbon_smooth]] <br /> cartoon_ladder_radius ribbon_throw <br /> cartoon_loop_cap ribbon_trace_atoms <br /> cartoon_loop_quality [[ribbon_width]] <br /> cartoon_loop_radius robust_logs <br /> [[cartoon_nucleic_acid_color]] rock_delay <br /> [[cartoon_nucleic_acid_mode]] roving_byres <br /> [[cartoon_oval_length]] roving_cartoon <br /> [[cartoon_oval_quality]] roving_delay <br /> [[cartoon_oval_width]] roving_detail <br /> cartoon_power roving_isomesh <br /> cartoon_power_b roving_isosurface <br /> cartoon_putty_quality roving_labels <br /> cartoon_putty_radius roving_lines <br /> cartoon_putty_range roving_map1_level <br /> cartoon_putty_scale_max roving_map1_name <br /> cartoon_putty_scale_min roving_map2_level <br /> cartoon_putty_scale_power roving_map2_name <br /> [[cartoon_rect_length]] roving_map3_level <br /> [[cartoon_rect_width]] roving_map3_name <br /> cartoon_refine roving_nb_spheres <br /> cartoon_refine_normals roving_nonbonded <br /> cartoon_refine_tips roving_origin <br /> cartoon_ring_color roving_origin_z <br /> cartoon_ring_finder roving_origin_z_cushion <br /> [[cartoon_ring_mode]] roving_polar_contacts <br /> cartoon_ring_radius roving_polar_cutoff <br /> [[cartoon_ring_transparency]] roving_ribbon <br /> cartoon_ring_width roving_selection <br /> [[cartoon_round_helices]] roving_spheres <br /> [[cartoon_sampling]] roving_sticks <br /> [[cartoon_side_chain_helper]] scene_animation <br /> cartoon_smooth_cycles scene_animation_duration <br /> cartoon_smooth_first scene_current_name <br /> cartoon_smooth_last scene_loop <br /> [[cartoon_smooth_loops]] scene_restart_movie_delay <br /> cartoon_throw scenes_changed <br /> cartoon_trace_atoms sculpt_angl_weight <br /> [[cartoon_transparency]] sculpt_auto_center <br /> cartoon_tube_cap sculpt_avd_excl <br /> cartoon_tube_quality sculpt_avd_gap <br /> cartoon_tube_radius sculpt_avd_range <br /> [[cavity_cull]] sculpt_avd_weight <br /> cgo_dot_radius sculpt_bond_weight <br /> cgo_dot_width sculpt_field_mask <br /> cgo_line_radius sculpt_hb_overlap <br /> cgo_line_width sculpt_hb_overlap_base <br /> cgo_ray_width_scale sculpt_line_weight <br /> cgo_sphere_quality sculpt_max_max <br /> cgo_transparency sculpt_max_min <br /> clamp_colors sculpt_max_scale <br /> connect_bonded sculpt_max_weight <br /> connect_cutoff sculpt_memory <br /> connect_mode sculpt_min_max <br /> coulomb_cutoff sculpt_min_min <br /> coulomb_dielectric sculpt_min_scale <br /> coulomb_units_factor sculpt_min_weight <br /> cull_spheres sculpt_nb_interval <br /> [[Dash_Gap]] sculpt_plan_weight <br /> [[Dash_Length]] sculpt_pyra_weight <br /> [[Dash_Radius]] sculpt_tors_tolerance <br /> [[Dash_Round_Ends]] sculpt_tors_weight <br /> dash_width sculpt_tri_max <br /> debug_pick sculpt_tri_min <br /> defer_builds_mode sculpt_tri_mode <br /> defer_updates sculpt_tri_scale <br /> [[depth_cue]] sculpt_tri_weight <br /> dihedral_label_position sculpt_vdw_scale <br /> dihedral_size sculpt_vdw_scale14 <br /> direct sculpt_vdw_vis_max <br /> dist_counter sculpt_vdw_vis_mid <br /> distance_exclusion sculpt_vdw_vis_min <br /> dot_color sculpt_vdw_vis_mode <br /> dot_density sculpt_vdw_weight <br /> dot_hydrogens sculpt_vdw_weight14 <br /> dot_lighting sculpting <br /> dot_mode sculpting_cycles <br /> dot_normals secondary_structure <br /> [[dot_radius]] security <br /> dot_solvent sel_counter<br /> [[dot_width]] selection_overlay <br /> draw_frames selection_round_points <br /> editor_auto_dihedral selection_visible_only <br /> editor_auto_origin [[selection_width]] <br /> editor_label_fragments selection_width_max <br /> fast_idle selection_width_scale <br /> fetch_path [[seq_view]] <br /> [[Field_Of_View]] seq_view_alignment <br /> fit_iterations seq_view_color <br /> fit_tolerance seq_view_discrete_by_state <br /> float_labels seq_view_fill_char <br /> [[fog]] seq_view_fill_color <br /> [[fog_start]] seq_view_format <br /> frame seq_view_label_color <br /> full_screen seq_view_label_mode <br /> gamma seq_view_label_spacing <br /> gaussian_b_adjust seq_view_label_start <br /> gaussian_b_floor [[seq_view_location]] <br /> gaussian_resolution seq_view_overlay <br /> gl_ambient seq_view_unaligned_color <br /> h_bond_cone seq_view_unaligned_mode <br /> h_bond_cutoff_center session_file <br /> h_bond_cutoff_edge session_migration <br /> h_bond_exclusion session_version_check <br /> h_bond_max_angle [[shininess]]<br /> h_bond_power_a show_alpha_checker <br /> h_bond_power_b show_progress <br /> [[half_bonds]] simplify_display_lists <br /> hash_max single_image <br /> hide_underscore_names slice_dynamic_grid <br /> idle_delay slice_dynamic_grid_resolution<br /> ignore_case slice_grid <br /> ignore_pdb_segi slice_height_map <br /> image_dots_per_inch slice_height_scale <br /> internal_feedback slice_track_camera <br /> [[Internal Gui|internal_gui]] slow_idle <br /> internal_gui_control_size smooth_color_triangle <br /> internal_gui_mode solvent_radius <br /> internal_gui_width spec_count <br /> [[internal_prompt]] spec_direct <br /> isomesh_auto_state spec_direct_power <br /> [[label_color]] spec_power <br /> [[Label_font_id]] [[spec_reflect]] <br /> [[Label_outline_color]] specular <br /> [[label_position]] specular_intensity <br /> [[label_shadow_mode]] [[sphere_color]] <br /> [[label_size]] [[sphere_mode]] <br /> legacy_mouse_zoom sphere_point_max_size <br /> legacy_vdw_radii sphere_point_size <br /> light [[sphere_quality]] <br /> light2 [[sphere_scale]] <br /> light3 sphere_solvent <br /> light4 [[sphere_transparency]] <br /> light5 spheroid_fill <br /> light6 spheroid_scale <br /> light7 spheroid_smooth <br /> light8 ss_helix_phi_exclude <br /> light9 ss_helix_phi_include <br /> [[light_count]] ss_helix_phi_target <br /> line_radius ss_helix_psi_exclude <br /> [[line_smooth]] ss_helix_psi_include <br /> line_stick_helper ss_helix_psi_target <br /> line_width ss_strand_phi_exclude <br /> log_box_selections ss_strand_phi_include <br /> log_conformations ss_strand_phi_target <br /> logging ss_strand_psi_exclude <br /> matrix_mode ss_strand_psi_include <br /> max_threads ss_strand_psi_target <br /> max_triangles state <br /> [[mesh_color]] static_singletons <br /> [[mesh_lighting]] [[stereo]]<br /> [[mesh_mode]] [[stereo_angle]]<br /> mesh_normals stereo_double_pump_mono <br /> [[mesh_quality]] [[stereo_mode]] <br /> mesh_radius stereo_shift <br /> mesh_solvent [[stick_ball]] <br /> [[mesh_type]] [[stick_ball_ratio]] <br /> [[mesh_width]] [[stick_color]]<br /> [[min_mesh_spacing]] stick_fixed_radius <br /> mouse_limit [[stick_nub]] <br /> mouse_restart_movie_delay stick_overlap <br /> mouse_scale stick_quality <br /> mouse_selection_mode stick_radius <br /> movie_delay [[stick_transparency]] <br /> movie_loop stick_valence_scale <br /> multiplex stop_on_exceptions <br /> no_idle surface_best <br /> nonbonded_size surface_carve_cutoff <br /> normal_workaround surface_carve_selection <br /> normalize_ccp4_maps surface_carve_state <br /> normalize_grd_maps surface_circumscribe <br /> normalize_o_maps surface_clear_cutoff <br /> nvidia_bugs surface_clear_selection <br /> opaque_background surface_clear_state <br /> [[orthoscopic]] surface_color <br /> overlay surface_debug <br /> overlay_lines surface_miserable <br /> pdb_conect_all surface_mode <br /> pdb_discrete_chains surface_normal <br /> pdb_echo_tags surface_optimize_subsets <br /> pdb_hetatm_sort surface_poor <br /> pdb_honor_model_number surface_proximity <br /> pdb_insertions_go_first surface_quality <br /> pdb_insure_orthogonal surface_ramp_above_mode <br /> pdb_literal_names surface_solvent <br /> pdb_no_end_record surface_trim_cutoff <br /> pdb_reformat_names_mode surface_trim_factor <br /> pdb_retain_ids surface_type <br /> pdb_standard_order suspend_updates <br /> pdb_truncate_residue_name swap_dsn6_bytes <br /> pdb_unbond_cations sweep_angle <br /> pdb_use_ter_records sweep_mode <br /> [[pickable]] sweep_phase <br /> png_file_gamma sweep_speed <br /> png_screen_gamma test1 <br /> power test2 <br /> pqr_no_chain_id text <br /> presentation texture_fonts <br /> presentation_auto_quit [[transparency]] <br /> presentation_auto_start transparency_mode <br /> presentation_mode transparency_picking_mode <br /> preserve_chempy_ids triangle_max_passes <br /> pymol_space_max_blue trim_dots <br /> pymol_space_max_green [[two_sided_lighting]]<br /> pymol_space_max_red use_display_lists <br /> pymol_space_min_factor [[valence]] <br /> raise_exceptions valence_default <br /> rank_assisted_sorts valence_size <br /> ray_blend_blue validate_object_names <br /> ray_blend_colors [[virtual_trackball]] <br /> ray_blend_green wildcard <br /> ray_blend_red wizard_prompt_mode <br /> ray_color_ramps wrap_output <br /> <br /> [[Category:Settings|All Settings]]</div>

Dan https://wiki.pymol.org/index.php?title=Settings&diff=10140&oldid=prev 2007-07-04T22:08:44Z

<p></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 22:08, 4 July 2007</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>These are all the PyMol settings.  If you feel like documenting them, and what they do, feel free.  <del class="diffchange diffchange-inline">42 </del>done, <del class="diffchange diffchange-inline">476 </del>to go !</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>These are all the PyMol settings.  If you feel like documenting them, and what they do, feel free.  <ins class="diffchange diffchange-inline">43 </ins>done, <ins class="diffchange diffchange-inline">475 </ins>to go !</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   active_selections              ray_default_renderer         </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   active_selections              ray_default_renderer         </div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l176" >Line 176:</td> <td colspan="2" class="diff-lineno">Line 176:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   legacy_mouse_zoom              sphere_point_max_size         </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   legacy_mouse_zoom              sphere_point_max_size         </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   legacy_vdw_radii              sphere_point_size             </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   legacy_vdw_radii              sphere_point_size             </div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   light                          sphere_quality               </div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   light                          <ins class="diffchange diffchange-inline">[[</ins>sphere_quality<ins class="diffchange diffchange-inline">]] </ins>               </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   light2                        [[sphere_scale]]                 </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   light2                        [[sphere_scale]]                 </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   light3                        sphere_solvent               </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   light3                        sphere_solvent               </div></td></tr> </table>

Rrowlett