Save - Revision history

Cchem: 1 revision

2016-10-17T00:07:05Z

1 revision

Jaredsampson: Add COLLADA (.dae) to autodetected formats.

2016-10-03T19:07:39Z

Add COLLADA (.dae) to autodetected formats.

Bell: 17 revisions

2014-03-28T03:49:33Z

17 revisions

Jaredsampson: /* SEE ALSO */

2013-11-21T14:54:35Z

Jaredsampson: /* Details */ updated list of auto-detected formats [from modules/pymol/exporting.py]; added default state = -1

2013-11-21T14:54:08Z

Details: updated list of auto-detected formats [from modules/pymol/exporting.py]; added default state = -1

New page

'''save''' writes selected atoms to a file.

=Details=
* The file format is autodetected if the extension is .pdb, .pqr, .mol, .sdf, .pkl, .pkla, .mmd, .out, .dat, .mmod, .pmo, .pov, .png, .pse, .psw, .aln, .fasta, .obj, .mtl, .wrl, .idtf, or .mol2.
* If the file extension is ".pse" (PyMOL Session), the complete PyMOL state is always saved to the file (the selection and state parameters are thus ignored).
* CLUSTALW formatted alignments can be written by PyMOL as well. Once you perform an alignment like the following,
::<source lang="python">
align proteinA, proteinB, object=A_on_B
</source>
::the alignment can be written using:
::<source lang="python">
save A_aligned_with_B.aln, A_on_B
</source>

===USAGE===
<source lang="python">
save file [,(selection) [,state [,format]] ]
</source>

=== EXAMPLES ===
<source lang="python">
# save only the alpha carbons
save onlyCAs.pdb, n. CA

# save my MD trajectory file to disk
save myTraj.pdb, myMDTrajectory, state=0

# save a PyMOL session
save thisSession.pse
</source>

===PYMOL API===
<source lang="python">
cmd.save(filename[, selection[, state[, format]]])
</source>

===NOTES===
* When saving a session file, then "state" has no effect.
* Default is state = -1, which saves only the current state.
* When state = 0, all states in the file are written. If you have more than one state, this produces a multi-state PDB file.

===SEE ALSO===
[[Load]], [[Get Model]]

[[Category:Commands|Save]]
[[Category:States|Save]]
[[Category:Input Output Module|Save]]

Folf: /* DESCRIPTION */

2009-09-11T13:25:57Z

DESCRIPTION

Vinnyrose at 14:56, 20 June 2009

2009-06-20T14:56:40Z

Vinnyrose at 14:24, 20 June 2009

2009-06-20T14:24:47Z

New page

===DESCRIPTION===
'''save''' writes selected atoms to a file. The file format is
autodetected if the extesion is ".pdb", ".pse", ".mol", ".mmod", or
".pkl"

Note that if the file extension ends in ".pse" (PyMOL Session), the
complete PyMOL state is always saved to the file (the selection and
state parameters are thus ignored).

===USAGE===
<source lang="python">
save file [,(selection) [,state [,format]] ]
</source>
===PYMOL API===
<source lang="python">
cmd.save(file, selection, state, format)
</source>

===NOTES===
* When saving a session file, then "state" has no effect.
* When state = 0 (default), only the current state is written.
* When state = -1, then a multi-state output file is written (PDB only).

* In versions 1.XX, a multi-state output file is written when state = 0 (which is not default)
===SEE ALSO===
[[Cmd load]], [[Cmd get_model]]

[[Category:Commands|Save]]
[[Category:States|Save]]

Chill at 12:14, 22 May 2008

2008-05-22T12:14:48Z

New page

Tree at 15:25, 24 February 2005

2005-02-24T15:25:52Z

← Older revision	Revision as of 00:07, 17 October 2016
(No difference)

@@ Line 2: / Line 2: @@
 =Details=
-* The file format is autodetected if the extension is .pdb, .pqr, .mol, .sdf, .pkl, .pkla, .mmd, .out, .dat, .mmod, .pmo, .pov, .png, .pse, .psw, .aln, .fasta, .obj, .mtl, .wrl, .idtf, or .mol2.
+* The file format is autodetected if the extension is .pdb, .pqr, .mol, .sdf, .pkl, .pkla, .mmd, .out, .dat, .mmod, .pmo, .pov, .png, .pse, .psw, .aln, .fasta, .obj, .mtl, .wrl, .idtf, .dae, or .mol2.
 * If the file extension is ".pse" (PyMOL Session), the complete PyMOL state is always saved to the file (the selection and state parameters are thus ignored).
 * CLUSTALW formatted alignments can be written by PyMOL as well. Once you perform an alignment like the following,

← Older revision	Revision as of 03:49, 28 March 2014
(No difference)

@@ Line 41: / Line 41: @@
 ===SEE ALSO===
-   [[Load]], [[Get Model]]
+[[Load]], [[Get Model]]
 [[Category:Commands|Save]]
 [[Category:States|Save]]
 [[Category:Input Output Module|Save]]

@@ Line 7: / Line 7: @@
 complete PyMOL state is always saved to the file (the selection and
 state parameters are thus ignored).
-−
 ===USAGE===
 <source lang="python">

@@ Line 10: / Line 10: @@
 ===USAGE===
+  <pre>
     save file [,(selection) [,state [,format]] ]
+  </pre>
 ===PYMOL API===
   <source lang="python">