Rotkit - Revision history

Bell: 43 revisions

2014-03-28T03:09:09Z

43 revisions

Tlinnet at 15:05, 15 January 2012

2012-01-15T15:05:36Z

Tlinnet at 23:27, 13 January 2012

2012-01-13T23:27:14Z

Tlinnet at 21:45, 11 December 2011

2011-12-11T21:45:30Z

Tlinnet: /* Example of use */

2011-12-11T12:54:17Z

Example of use

Tlinnet: /* Example of use */

2011-12-11T12:52:56Z

Example of use

Tlinnet at 12:49, 11 December 2011

2011-12-11T12:49:35Z

Show changes

Tlinnet: /* Python Code */

2011-12-11T12:39:01Z

Python Code

Tlinnet at 12:38, 11 December 2011

2011-12-11T12:38:02Z

Tlinnet: /* Python Code */

2011-12-04T15:03:56Z

Python Code

← Older revision		Revision as of 15:05, 15 January 2012
Line 77:		Line 77:
	[[Category:Script_Library]]		[[Category:Script_Library]]
	[[Category:ObjSel_Scripts]]		[[Category:ObjSel_Scripts]]
		+	[[Category:Pymol-script-repo]]

@@ Line 2: / Line 2: @@
 |type      = script
 |filename  = rotkit.py
-|author    = [[Users:Tlinnet|Troels E. Linnet]]
+|author    = [[User:Tlinnet|Troels E. Linnet]]
 |license   = BSD
 }}

@@ Line 2: / Line 2: @@
 |type      = script
 |filename  = rotkit.py
-|author    = Troels E. Linnet
+|author    = [[Users:Tlinnet|Troels E. Linnet]]
-|license   = Free
+|license   = BSD
 }}
@@ Line 67: / Line 67: @@
 {{Template:PymolScriptRepoDownload|examples/rotkit_3.pml}}
 <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/rotkit_3.pml" highlight="python" />
 === Example 4 -  A tutorial file ===
@@ Line 75: / Line 74: @@
 {{Template:PymolScriptRepoDownload|examples/rotkit_4.pml}}
 <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/rotkit_4.pml" highlight="python" />
 [[Category:Script_Library]]
 [[Category:ObjSel_Scripts]]

@@ Line 55: / Line 55: @@
 </gallery>
-= Example of use =
+== Example of use ==
-== Example 1 - Make a rotation of domain ==
+=== Example 1 - Make a rotation of domain ===
 {{Template:PymolScriptRepoDownload|examples/rotkit_1.pml}}
 <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/rotkit_1.pml" highlight="python" />

@@ Line 55: / Line 55: @@
 </gallery>
-== Example of use ==
+= Example of use =
-=== Example 1 - Make a rotation of domain ===
+== Example 1 - Make a rotation of domain ==
-{{Infobox script-repo
+{{Template:PymolScriptRepoDownload|examples/rotkit_1.pml}}
-|type      = pml
+<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/rotkit_1.pml" highlight="python" />
 === Example 2 - Simulate dye freedom ===
-{{Infobox script-repo
+{{Template:PymolScriptRepoDownload|examples/rotkit_2.pml}}
-|type      = pml
+<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/rotkit_2.pml" highlight="python" />
 === Example 3 - Create distance distribution histogram ===
-{{Infobox script-repo
+{{Template:PymolScriptRepoDownload|examples/rotkit_3.pml}}
-|type      = pml
+<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/rotkit_3.pml" highlight="python" />
-|filename  = examples/rotkit_3.pml
 === Example 4 -  A tutorial file ===
-{{Infobox script-repo
+To understand how the functions works, read through the tutorial. Hash/Unhash "##" each step at the time to see the effect.
-|type      = pml
+To be able to follow the tutorial, you need the dye molecule, which is loaded from the Pymol-script-repository.
-To understand how the functions works, read through the tutorial. Hash/Unhash "##" each step at the time to see the effect.
+{{Template:PymolScriptRepoDownload|examples/rotkit_4.pml}}
 [[Category:Script_Library]]
 [[Category:ObjSel_Scripts]]

← Older revision	Revision as of 03:09, 28 March 2014
(No difference)

@@ Line 421: / Line 421: @@
 print("rotateline Pos1=%s, Pos2=%s, degangle=10, molecule=%s"%(molnameselect13, pcross, molname))
 </syntaxhighlight>
 [[Category:Script_Library]]
 [[Category:ObjSel_Scripts]]

@@ Line 52: / Line 52: @@
 == Example of use ==
-=== Make a rotation of domain ===
+=== Example 1 - Make a rotation of domain ===
 <syntaxhighlight lang="python">
 reinitialize
@@ Line 96: / Line 96: @@
 </syntaxhighlight>
-=== Simulate dye freedom ===
+=== Example 2 - Simulate dye freedom ===
 <syntaxhighlight lang="python">
 reinitialize
@@ Line 167: / Line 167: @@
 </syntaxhighlight>
-=== Create distance distribution histogram ===
+=== Example 3 - Create distance distribution histogram ===
 <syntaxhighlight lang="python">
 reinitialize
@@ Line 252: / Line 252: @@
 </syntaxhighlight>
-== A tutorial.pml file ==
+=== Example 4 -  A tutorial file ===
 To understand how the functions works, read through the tutorial. Hash/Unhash "##" each step at the time to see the effect.

@@ Line 423: / Line 423: @@
 == Python Code ==
-For a color coded view:
+{{Template:PymolScriptRepoDownload|rotkit.py}}
 [[Category:Script_Library]]
 [[Category:ObjSel_Scripts]]