Rms - Revision history

Bell: 10 revisions

2014-03-28T03:09:02Z

10 revisions

Hongbo zhu: the user comments section in page intra_rms referred by this page had been removed for irrelevance. Based on its importance the section is copied here.

2013-11-20T09:48:31Z

the user comments section in page intra_rms referred by this page had been removed for irrelevance. Based on its importance the section is copied here.

Slaw at 01:44, 27 August 2010

2010-08-27T01:44:31Z

New page

[[Rms]] computes a RMS fit between two atom selections, but does not tranform the models after performing the fit.

===USAGE===
<source lang="python">
rms (selection), (target-selection)
</source>
===EXAMPLES===
<source lang="python">
fit ( mutant and name ca ), ( wildtype and name ca )
</source>

===USER COMMENTS===

To determine the RMS without any fitting, see [[Rms_Cur]]

See [[Intra_Rms]] for selection caveats for this group of commands.

===SEE ALSO===
[[Fit]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms]], [[Intra_Rms_Cur]], [[Pair_Fit]]

[[Category:Commands|Rms]]
[[Category:Structure_Alignment|Rms]]

Vinnyrose at 14:23, 20 June 2009

2009-06-20T14:23:02Z

New page

===DESCRIPTION===
[[Rms]] computes a RMS fit between two atom selections, but does not tranform the models after performing the fit.

===USAGE===
<source lang="python">
rms (selection), (target-selection)
</source>
===EXAMPLES===
<source lang="python">
fit ( mutant and name ca ), ( wildtype and name ca )
</source>

===USER COMMENTS===
See [[Intra_Rms]] for selection caveats for this group of commands.

===SEE ALSO===
[[Fit]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms]], [[Intra_Rms_Cur]], [[Pair_Fit]]

[[Category:Commands|Rms]]
[[Category:Structure_Alignment|Rms]]

Cmoad at 17:17, 17 February 2005

2005-02-17T17:17:13Z

New page

===DESCRIPTION===
"rms" computes a RMS fit between two atom selections, but does not
tranform the models after performing the fit.

===USAGE===
rms (selection), (target-selection)

===EXAMPLES===
fit ( mutant and name ca ), ( wildtype and name ca )

===SEE ALSO===
[[Cmd fit|fit]], [[Cmd rms_cur|rms_cur]], [[Cmd intra_fit|intra_fit]], [[Cmd intra_rms|intra_rms]], [[Cmd intra_rms_cur|intra_rms_cur]], [[Cmd pair_fit|pair_fit]]

[[Category:Commands|rms]]

← Older revision	Revision as of 03:09, 28 March 2014
(No difference)

@@ Line 14: / Line 14: @@
 To determine the RMS without any fitting, see [[Rms_Cur]]
-See [[Intra_Rms]] for selection caveats for this group of commands.
+[[Fit]], [[Rms]], [[Rms_Cur]] are finicky and only work when all atom identifiers match: segi, chain, resn, name, alt.  If they don't then you'll need to use the alter command to change the identifiers to that they do -- typically that means clearing out the SEGI field, renaming chains, and sometimes renumbering.
 ===SEE ALSO===
 [[Fit]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms]], [[Intra_Rms_Cur]], [[Pair_Fit]]
 [[Category:Commands|Rms]]
 [[Category:Structure_Alignment|Rms]]