Removealt - Revision history

Bell: 8 revisions

2014-03-28T03:49:11Z

8 revisions

Tlinnet at 15:04, 15 January 2012

2012-01-15T15:04:54Z

Tlinnet at 23:26, 13 January 2012

2012-01-13T23:26:55Z

Speleo3: usage, example

2011-12-14T09:20:18Z

usage, example

Tlinnet: moved RemoveAlt to Removealt: small letters

2011-12-13T22:08:54Z

moved RemoveAlt to Removealt: small letters

Tlinnet at 22:08, 13 December 2011

2011-12-13T22:08:41Z

Speleo3: obj=all, comma

2011-04-21T07:06:58Z

obj=all, comma

New page

= Overview =
[[removeAlt]] removes all atoms from '''obj''' that have alternate locations but aren't altloc '''keep'''.

= The Code =
<source lang="python">
def removeAlt(obj="(all)", keep="A"):
"""
removeAlt -- remove all alternate location-atoms not of altloc "keep" from object.

input:
obj -- the object(s) to remove the atoms frmo
keep -- which type of alt loc to keep

output: none -- removes atoms

examples:
removeAlt # remove all altLocations that aren't altloc A
removeAlt pdbID, C # remove all but C altlocations from pdbID
"""
# select & remove all non A altlocs
remStr = "%s and not (alt ''+%s)" % (obj, keep);
cmd.remove(remStr);
# reset the PDB information
cmd.alter( obj, "alt=''")

cmd.extend("removeAlt", removeAlt)
</source>

= See Also =
[[Property_Selectors#Alternate_Locations|Handling Alternate Locations]] and [[alter]]

[[Category:Script_Library]]
[[Category:ObjSel_Scripts]]

← Older revision		Revision as of 15:04, 15 January 2012
Line 36:		Line 36:
	[[Category:Script_Library]]		[[Category:Script_Library]]
	[[Category:ObjSel_Scripts]]		[[Category:ObjSel_Scripts]]
		+	[[Category:Pymol-script-repo]]

@@ Line 2: / Line 2: @@
 |type      = script
 |filename  = removealt.py
-|author    = [[Users:Inchoate|Jason Vertrees]]
+|author    = [[User:Inchoate|Jason Vertrees]]
 |license   = Free
 }}

← Older revision	Revision as of 03:49, 28 March 2014
(No difference)

@@ Line 6: / Line 6: @@
 }}
 [[removeAlt]] removes all atoms from '''obj''' that have alternate locations but aren't altloc '''keep'''.
-=== Example 1 ===
+== Usage ==
-= See Also =
+ removealt [ obj [, keep ]]
 [[Property_Selectors#Alternate_Locations|Handling Alternate Locations]] and [[alter]]
 [[Category:Script_Library]]
 [[Category:ObjSel_Scripts]]

← Older revision	Revision as of 22:08, 13 December 2011
(No difference)

@@ Line 1: / Line 1: @@
 = Overview =
 [[removeAlt]] removes all atoms from '''obj''' that have alternate locations but aren't altloc '''keep'''.
-= The Code =
+=== Example 1 ===
-<source lang="python">
+{{Template:PymolScriptRepoDownload|examples/removealt_1.pml}}
-def removeAlt(obj="(all)", keep="A"):
+<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/removealt_1.pml" highlight="python" />
 = See Also =
 [[Property_Selectors#Alternate_Locations|Handling Alternate Locations]] and [[alter]]
 [[Category:Script_Library]]
 [[Category:ObjSel_Scripts]]